Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi339g00019 ATGGAAAGCACTGTGGCATATGAGAATGATCTCAACCTCAAGGCTACTGAGCTAAGATTGGGGCTTCCAGGGACAGAAGAAAATGAGGAGAAAGCATTGGTTGCTGTTAAAACCAACAAAAGGCCATTGACTGAAACTTCTGAGGAGTGTGGTTCAAAGGGCTCTAATGCTCAACATGTGGACAGTGATGCAGCCCCTCCTTCCAAGGCAAAGATAGTGGGGTGGCCACCAATCAGATCCTACAGGAAAAACAGCCTGCAGGAGGCTGAGGCTGAGGCTGCAGGGATCTATGTGAAAGTTAGCATGGATGGAGCCCCTTACCTCAGAAAGATAGACCTGAGGGTCTATGGAGGCTACAGAGAACTCCTCAAAGCTTTAGAAAACATGTTCAAGTTGACCATAGGTGAGTACTCTGAAAAAGAAGGTTATAAGGGTTCTGATTATGCACCTACATATGAAGACAAGGACGGTGACTGGATGTTAGTTGGAGATGTTCCATGGGACATGTTTGTGACTTCTTGCAAAAGGCTAAGAATCATGAAAGGATCAGAAGCCAGAGGTTTAGGTTGTGGTGTATGA 579 0.4577 MESTVAYENDLNLKATELRLGLPGTEENEEKALVAVKTNKRPLTETSEECGSKGSNAQHVDSDAAPPSKAKIVGWPPIRSYRKNSLQEAEAEAAGIYVKVSMDGAPYLRKIDLRVYGGYRELLKALENMFKLTIGEYSEKEGYKGSDYAPTYEDKDGDWMLVGDVPWDMFVTSCKRLRIMKGSEARGLGCGV 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi339g00019 192 Pfam AUX/IAA family 51 189 IPR033389 -
Sebi339g00019 192 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 186 IPR003311 GO:0005634|GO:0006355
Sebi339g00019 192 Gene3D - 89 192 - -
Sebi339g00019 192 FunFam Auxin-responsive protein 90 192 - -
Sebi339g00019 192 SUPERFAMILY CAD & PB1 domains 93 181 - -
Sebi339g00019 192 MobiDBLite consensus disorder prediction 48 62 - -
Sebi339g00019 192 MobiDBLite consensus disorder prediction 38 68 - -
Sebi339g00019 192 ProSiteProfiles PB1 domain profile. 95 182 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi339g00019 Sebi-Chr339 364027 364940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi339g00019 98 188 B3 DNA Binding Superfamily AT2G46530 38.462 1.48e-11 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Sebi339g00019 AUX_IAA 6.7e-55 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi339g00019 K14484 - qsa:O6P43_021494 326.635