Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi338g00055 ATGAAAATACCGAGCAGCCCAACAAAGAAGCAGTCTGTTGGCGATCCAAAGACACACATGATCTCACCCTCCCGCTCCCGCCACTTGTTTCGATCTTCAAAAAATCTGCGAAGAAGGAAAACCGCCGCTCGTTCTTCTTGGAACCACCACATCGACCAATATGACATTTCCTCCTCCAATAGTAATAGTCCATACTACAAAGGCCTCACTGATCAATCCCTTGCTATCTTGGATGATGGTCCTACCCCTACCGCTCTTCATTCTCACAACCACACTAATTACCTCCTCTCATCTGGCCATAGCCCTTACTACAAAGGTCTTACCGATTATTCCCTTGCTATTGGCCCTCCCACCCCTCCTCATCTTCACAATTACCATCCTTCTTCCGATTCTAGCCCTAGCCCTTACTACAGGGGTCTCATTGATTACTCCCTTGCTCTTCATCCACCTTCATCTCCTGCTACTAACTCCCACTCTTCTATCTTCTCCATCAACTTCTACACCCGCTTTTACATCAAAGGTCGGGAAGAAGAAGAAGGCGAAGAACTCACTGCTCCTCCGTCATCATCCATCCATGCTGATCATGTTGCCTTTCTAATTGAACAGAACAACAACACTCTGTCTGAAGAAGAAAGTAAGATGGAGTTGATTGTTGAAGAGGAGAAGCCTTTGAGGGAGACAGAATCAGATCAAGCAATCAAGGTAATTGAGAGTGTATTAGAAGAAAATGCAAAGAAAACAGTTTTGGAGGAGGAGATGGAATTGTTGCCTAGCGATGATGTTGAGTTGGTGATCATTCAAGAGAAGCCATTGAGGGAGAGAGTATCAGAAACAGAGATTGTATTAGACAAAACAGTTTTAGAGGATGATAATAATGAGATGGTGATTGAAGAGAAGCCATTGAGGGAGACAGATCAGGCAAGTAAGGTTGGGATTAATGCATCATTAGAAGAGAAAACAATTGTGCAAGGAATGACTGATGTCGAGTTGGTTATTGAAGAGAAGCCATTGAGGGAGAGAGTATCAGAAGAAAGTAATACAGAGAAAACATTAATTGTGGAGGAGTTGGATATTCAAGGGAATAAGGAGGAACTCACTTCTGAAAAGGAGAAGTCCACTGTCTTGTCAGTTTCTGAACAAACAGTTGAATCAGAATTAGGAAATCACAAGTTGAAGGAGAAGAAGGACACAGTTGAGGAAGGAAATGTGTACAAGGAGTATGTATGGGCAACCAAATACCAACCTGTTACCTTGGAAGACTTCATCTGCAACAGAGATAAAGCCCTTCAGCTTAAAGCATTGGTAAAAGATGGGTGTGCCTGTAATCATTTTATATTTGAAGGGCCACCAAATTCTGGAAAGAGATCCATGATACGGGCTATGCTTCGAGAGGTGTTTGGGGCTGACAGAGTGCAGGTCACAGAAGAATATAAAAACTTCAACTTGAAGGGAGAAATGATTGATAATCTGCAAGTGCGCATAAAGAAATCACTGCATCATTTTGAGGTCAATCTCTCAGAGACAAAGGGATATGAAAAACATGTAATTGATGATTTATTCAAGGAAACATATGGTAAGATCATAAACAACTCACTGCCTTGTAGCCCAGAAAACTGCCAAGCGATCATTTTGTATGAGGCTGAGAAGCTATCGATAGAATCCTTGTTGTATATTAAGTGGCTACTAGAAAAGTATAAAGGGTGTAGTAAGGTATTCTTTTGTTGCTCTGATGAATCAAAGCTCCAACCTGTCAAATCACTTTGCATCACCTTCCGCCTTTCATCTCCATCAACCGAAGAGATTGCTAAGATGTTGGAATATATTGGAAAAGGAGAAGGAATAAAATTATCACGCGACGTAGTTGAAAAGATAACTTTGAGGTCCAAAAACAATCTCCGCCAAGCCATTCGTTCATTGGAGGCCACCTGCCGAAACAAGGATATCCTTAGAGACGACGATTTAATTTTAACTGGATGGGAGGATGATATTTTGAATATTGCTAAAAGTATAATCGAAGAGCAAAGTCCAAGACGGTTGTACGTCATTCGTAGAAAGCTCCGATGTCTTATGATTCATGATGTTCCTCCTGACTTTATTTACAAGTCTTTGGTTGCAGCGTTAACGAGTTTAGTTGATGACTCACTACAGTCAGGGGTTGCCAAACTCGACAAGGAGTACAACAAAACTACTGAGATCAAATTTGAAACGCTGAAGCAGTTCGGTCATGCTCAAAACAAAGCATTAAACTACTTAAAAGTTGAAGGAAAATGA 2271 0.413 MKIPSSPTKKQSVGDPKTHMISPSRSRHLFRSSKNLRRRKTAARSSWNHHIDQYDISSSNSNSPYYKGLTDQSLAILDDGPTPTALHSHNHTNYLLSSGHSPYYKGLTDYSLAIGPPTPPHLHNYHPSSDSSPSPYYRGLIDYSLALHPPSSPATNSHSSIFSINFYTRFYIKGREEEEGEELTAPPSSSIHADHVAFLIEQNNNTLSEEESKMELIVEEEKPLRETESDQAIKVIESVLEENAKKTVLEEEMELLPSDDVELVIIQEKPLRERVSETEIVLDKTVLEDDNNEMVIEEKPLRETDQASKVGINASLEEKTIVQGMTDVELVIEEKPLRERVSEESNTEKTLIVEELDIQGNKEELTSEKEKSTVLSVSEQTVESELGNHKLKEKKDTVEEGNVYKEYVWATKYQPVTLEDFICNRDKALQLKALVKDGCACNHFIFEGPPNSGKRSMIRAMLREVFGADRVQVTEEYKNFNLKGEMIDNLQVRIKKSLHHFEVNLSETKGYEKHVIDDLFKETYGKIINNSLPCSPENCQAIILYEAEKLSIESLLYIKWLLEKYKGCSKVFFCCSDESKLQPVKSLCITFRLSSPSTEEIAKMLEYIGKGEGIKLSRDVVEKITLRSKNNLRQAIRSLEATCRNKDILRDDDLILTGWEDDILNIAKSIIEEQSPRRLYVIRRKLRCLMIHDVPPDFIYKSLVAALTSLVDDSLQSGVAKLDKEYNKTTEIKFETLKQFGHAQNKALNYLKVEGK 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi338g00055 756 CDD HLD_clamp_RFC 596 654 - -
Sebi338g00055 756 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 409 715 - -
Sebi338g00055 756 Gene3D - 597 656 - -
Sebi338g00055 756 Coils Coil 200 220 - -
Sebi338g00055 756 MobiDBLite consensus disorder prediction 1 27 - -
Sebi338g00055 756 SUPERFAMILY post-AAA+ oligomerization domain-like 658 728 IPR008921 GO:0003677|GO:0006260
Sebi338g00055 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 407 654 IPR027417 -
Sebi338g00055 756 Gene3D - 658 748 - -
Sebi338g00055 756 FunFam Replication factor C subunit 3 407 596 - -
Sebi338g00055 756 Gene3D - 407 596 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi338g00055 Sebi-Chr338 798901 811622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi338g00055 408 726 Core DNA Replication Machinery Family AT5G27740 30.247 1.89e-44 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi338g00055 K10756 - gmx:102664389 689.493