LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi338g00050	ATGCTAGAAAACATTCAACCAGCTCCAGCAACGGAATCGGCCACAGTGGTCAAGCGCTATGCTCCTCCCAATCAGAGGAACCGTTCTACCAATAGGCGCAAACCATCTGATCGGCTCGATCGGACGAACAGTATTGGGAATGATTTAGAAAAGAATCAAGTTGCTTCTTCAAGAAATGTTCAAGTTCCAGATCATGGAGATGCTGTTAGCAGTAATCTTCATAATGAGAATCATTATTCAAGATTCATAGCTTTAGAAGGATGTAGTTGCAGTGCAGCTTCCCAGCTCCTTAATGATCGTTGGACAGCTGCAATACAGTCCTACAACAATCCCAAAGATTCATCAGCCACTGGCAGTGGTACTCACAGAGACGCAATGGTGGTAGGGCAAGCTCTTCCTTCTCCTTCTCCTTCAATTTCGAGCCTCAAACATTCTGGAAAAACGGTGCTGCTCACCCTCGGAGTTAGAGTCACACCCTCTTTCTCTGTTTCCGCCACTGCTTCCACCAATCATGTTCATGAAGACGCCTCCTCAACCAATGACAATGATTCTCCCATCAAACCATCATCAAGTTTTGGAAGACTAAAAGCCCACCAAGTGAAAGCTCTCATTCACAGAACCAAGCAGCAAAAACGCACTCTTGATGATAACCCTGTTCTACAATCTACCAATTCTATTGAAGACTCTGATGACACCGATAGTCGTAAACCCCGTTCTTCAAGTACAAGGCGTTCTCCCCCTCATTTAAGAGGATGGAGTGATAGCATTCCCAAGTCTCAATCACAAAAGGAACACAGAAAATCATCTTTGACGGACACCAACTTTTTCAGTCTCAAGTCCTTTAAAGATATAGGCTGCACTGACAATATCATTCAATCCCTACAAAGCCAGTCCTATAAGCGCCCTTCACATATACAGGCCATGGCATTTGCTCCTGTTGTTGGCAGAAAGACTTGTGTCATAGCTGATCAAAGCGGTTCCGGAAAGACCTTAGCTTATCTTGCACCAATAGTTCAGCGTCTCAGACAAGAAGAACTAGAAGGACATAGTAAATCCTCTTCACAAGCTCCTAGAGTGGTTGTACTGGCACCAACAGCTGAGTTGGCTTCTCAGGTCTTGAATAATTGTCGATCATTGTCAAAATCTGGGGTTCCATTCAAATCTATGGTTGTCACGGGTGGCTTTCGACAAAGAACTCAACTGGAAAATTTACAACAGGGTGTAGATGTCTTAATAGCCACACCTGGCCGTTTCTTGTTCCTGATAAAGGAAGGCTTCTTGCAGTTAACGAATCTTAGATGTGCTGTGTTGGATGAGGTTGATATACTCTTTGGTGATGAGGACTTCGAAGTGGCTCTTCAATGCTTGATTAATTCTTCACCAGTTGACACACAATATTTATTTGTGACTGCAACTTTACCAAAAAATGTTTATAGCAAACTGGTTGAAGTTTTTCCCGATTGTGAAATGATCATGGGACCTGGTATGCACCGAATAAGCTCTCGCCTTGAAGAGATTGTAGTAGATTGCAGTGGAGACGATGGACAAGAAAAAACTCCTGACACAGCATTTTTGAACAAGAAAGCTGCTCTTCTGCAGCTTGTGGAGGGAAGCCCTGTCCCAAGAACTATCGTGTTCTGTAACAAAATTGAAACATGCAGAAAAGTTGAAAATGCATTAAAGCGTTTTGATAGAAAAGGAATGCGAATGCAAGTTCTACCATTCCATGCTGCCATGACACAAGAATCACGGCTTTCAAGTATGGAAGAGTTTAGACGTTCTCCATCAAAAGAAGTATCTCAGTTTATGGTTTGCACTGACAGAGCATCACGGGGAATTGACTTCACAGGAGTGGATCATGTCATACTTTTTGACTTCCCACGCGATCCAAGTGAATATGTACGGCGTGTGGGAAGAACAGCGAGAGGTGCTAAGGGACAGGGCAAGGCATATATCTTTGTGGTTGGCAAGCAACATGGCAAGGAGCGCTTTCAGTTTCAGCTGCTTAAGAACCACCTTCCTCATCCAGTGGCAATATTCAAAGCTACTTGCAAATCCATTGTCAGTTGGCTTATAGTAACACTGACGTACAAAGGTGGTGGTTTGCAACATTGCTCGTATCAAAAGCAAGACTTTTACCTACCGTAG	2148	0.4353	MLENIQPAPATESATVVKRYAPPNQRNRSTNRRKPSDRLDRTNSIGNDLEKNQVASSRNVQVPDHGDAVSSNLHNENHYSRFIALEGCSCSAASQLLNDRWTAAIQSYNNPKDSSATGSGTHRDAMVVGQALPSPSPSISSLKHSGKTVLLTLGVRVTPSFSVSATASTNHVHEDASSTNDNDSPIKPSSSFGRLKAHQVKALIHRTKQQKRTLDDNPVLQSTNSIEDSDDTDSRKPRSSSTRRSPPHLRGWSDSIPKSQSQKEHRKSSLTDTNFFSLKSFKDIGCTDNIIQSLQSQSYKRPSHIQAMAFAPVVGRKTCVIADQSGSGKTLAYLAPIVQRLRQEELEGHSKSSSQAPRVVVLAPTAELASQVLNNCRSLSKSGVPFKSMVVTGGFRQRTQLENLQQGVDVLIATPGRFLFLIKEGFLQLTNLRCAVLDEVDILFGDEDFEVALQCLINSSPVDTQYLFVTATLPKNVYSKLVEVFPDCEMIMGPGMHRISSRLEEIVVDCSGDDGQEKTPDTAFLNKKAALLQLVEGSPVPRTIVFCNKIETCRKVENALKRFDRKGMRMQVLPFHAAMTQESRLSSMEEFRRSPSKEVSQFMVCTDRASRGIDFTGVDHVILFDFPRDPSEYVRRVGRTARGAKGQGKAYIFVVGKQHGKERFQFQLLKNHLPHPVAIFKATCKSIVSWLIVTLTYKGGGLQHCSYQKQDFYLP	715

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi338g00050	715	ProSiteProfiles	Superfamilies 1 and 2 helicase C-terminal domain profile.	530	688	IPR001650	-
	Sebi338g00050	715	CDD	SF2_C_DEAD	503	654	-	-
	Sebi338g00050	715	SMART	helicmild6	554	644	IPR001650	-
	Sebi338g00050	715	ProSiteProfiles	Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile.	310	491	IPR014001	-
	Sebi338g00050	715	Pfam	Helicase conserved C-terminal domain	527	643	IPR001650	-
	Sebi338g00050	715	MobiDBLite	consensus disorder prediction	46	72	-	-
	Sebi338g00050	715	MobiDBLite	consensus disorder prediction	169	269	-	-
	Sebi338g00050	715	SMART	ultradead3	298	506	IPR014001	-
	Sebi338g00050	715	CDD	DEADc	290	477	-	-
	Sebi338g00050	715	Gene3D	-	249	491	IPR027417	-
	Sebi338g00050	715	ProSiteProfiles	DEAD-box RNA helicase Q motif profile.	279	307	IPR014014	GO:0003724
	Sebi338g00050	715	MobiDBLite	consensus disorder prediction	244	258	-	-
	Sebi338g00050	715	Gene3D	-	504	673	IPR027417	-
	Sebi338g00050	715	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	315	655	IPR027417	-
	Sebi338g00050	715	MobiDBLite	consensus disorder prediction	30	45	-	-
	Sebi338g00050	715	MobiDBLite	consensus disorder prediction	169	189	-	-
	Sebi338g00050	715	PANTHER	DEAD-BOX ATP-DEPENDENT RNA HELICASE 50	199	659	-	-
	Sebi338g00050	715	Pfam	DEAD/DEAH box helicase	304	477	IPR011545	GO:0003676\|GO:0005524
	Sebi338g00050	715	MobiDBLite	consensus disorder prediction	1	72	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi338g00050	Sebi-Chr338	744165	767712	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi338g00050	278	652	Eukaryotic Initiation Factors Gene Family	AT3G19760	26.316	2.93e-28	116

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi338g00050	K13179		-	gmx:100784377	699.508