Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi338g00046 ATGGACATCAGTGAAGGAAAAGAGCCCATGGAGGATGTGTGGTTAGAGTTCCTGGATGAGGCTTTGGAGGATCTGGAAATGCTCTTCCAACAGTGCGACCACATTATGCCTTCCTTTGATGATGCGCTTCTTCCAACAGCTGCAACAAGTGCAATGGAATACAATGGAAGGTGTGATCAATCACAACGAGTAGCCTCGTTAAGTAGGTTTCGGCAAAAGAGGAAAGAGCGATGTTTTCATAGCAAAACTACATCTGGTGATAATGGTGCAATGGAATATCCTGAAAGATATAGTCAAACGGAACGAGCAGCCTCATTAAGTAGGTTCCAGAACAAGAAGAAAGAACGATCCTTTGGTAATAAAGTCAGATATAGTTCACGTCAAGAAGCTGCTCTCAGGGTGCACCGTAGTAAGACTCAAATTATTCTGTCCAAAATGCGAGATGGATCCAATAGTTTGGGGGCTATTCCAGAGTCTCCACAAGATGATATCCACTCAGAAATCTTGTGA 510 0.4333 MDISEGKEPMEDVWLEFLDEALEDLEMLFQQCDHIMPSFDDALLPTAATSAMEYNGRCDQSQRVASLSRFRQKRKERCFHSKTTSGDNGAMEYPERYSQTERAASLSRFQNKKKERSFGNKVRYSSRQEAALRVHRSKTQIILSKMRDGSNSLGAIPESPQDDIHSEIL 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi338g00046 169 Pfam CCT motif 102 139 IPR010402 GO:0005515
Sebi338g00046 169 MobiDBLite consensus disorder prediction 107 122 - -
Sebi338g00046 169 MobiDBLite consensus disorder prediction 78 122 - -
Sebi338g00046 169 MobiDBLite consensus disorder prediction 145 169 - -
Sebi338g00046 169 Pfam Jas motif 62 80 IPR018467 -
Sebi338g00046 169 PANTHER GATA TRANSCRIPTION FACTOR 28 87 167 IPR045280 GO:0006355
Sebi338g00046 169 ProSiteProfiles CCT domain profile. 102 144 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi338g00046 Sebi-Chr338 710226 711090 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi338g00046 91 168 Tify Gene Family AT4G24470 50.000 7.50e-16 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sebi338g00046 CCT 9e-09 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi338g00046 - - pvu:PHAVU_008G182900g 90.8929