Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi338g00042 ATGGATGAGGAGTACGAGGGCAATGTAGAGGCCACTGGAGAGGATTTTTCAGTTGAACCTGCTGAGACCAGGAGGCCATTCCGTGCTCTCCTTGATGTTGGTCTTATTAGGACCACAACTGGCAATCGTGTCTTTGGTGCACTTAAGGGAGCTTTGGATGGGGGTTTGGATATCCCTCACAGTGATAAAAGGTTTGCTGGTTTTGACAAGGAGAAGAAAGAGCTTGATGCTGAGACGTTGATGGAAGATGAACCGGAGAAGTACCAGTCACACTTCAGTGAATATATCAAGCGTGGGATTGATGCTGATGGAATTGAGGGACTATACAAAAAGGTTCATGCTGCCATTCGTGCAGATCCCACAATAAAGAAGTCTGAGAAGCAGCCACCAAAGGAACACAAGAGATACAACCTCAAGAAGCTCACATATGAGGAGAGGAAAACGAAGTTGATTGCACGCTTGCAAGCTCTTAACTCTGCAGCTGGATGTGCTGATGAAGATGATGAGTGA 510 0.4627 MDEEYEGNVEATGEDFSVEPAETRRPFRALLDVGLIRTTTGNRVFGALKGALDGGLDIPHSDKRFAGFDKEKKELDAETLMEDEPEKYQSHFSEYIKRGIDADGIEGLYKKVHAAIRADPTIKKSEKQPPKEHKRYNLKKLTYEERKTKLIARLQALNSAAGCADEDDE 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi338g00042 169 MobiDBLite consensus disorder prediction 120 139 - -
Sebi338g00042 169 PANTHER RIBOSOMAL PROTEIN L5-RELATED 1 160 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Sebi338g00042 169 MobiDBLite consensus disorder prediction 1 20 - -
Sebi338g00042 169 SUPERFAMILY Translational machinery components 21 122 - -
Sebi338g00042 169 Pfam Ribosomal L18 C-terminal region 105 158 IPR025607 -
Sebi338g00042 169 PRINTS Ribosomal protein L5 signature 30 49 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Sebi338g00042 169 PRINTS Ribosomal protein L5 signature 50 69 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
Sebi338g00042 169 Gene3D - 1 161 - -
Sebi338g00042 169 Pfam Ribosomal large subunit proteins 60S L5, and 50S L18 1 61 IPR005485 GO:0003735|GO:0005840|GO:0006412|GO:0008097
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi338g00042 Sebi-Chr338 630021 631071 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi338g00042 1 162 Cytoplasmic Ribosomal Protein Gene Family AT5G39740 73.596 1.32e-89 262
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi338g00042 K02932 - twl:120008476 293.123