Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi338g00039 ATGTCGAAGGAAGTGAGCGAAGAAGGACACCAAACCCATCACGGGAAAGACTACGTTGACCCACCACCGGCACCTCTCATCGACTTGGCTGAGATTAAGCTCTGGTCCTTTTACAGAGCTCTCATTGCTGAGTTCATAGCTACTCTCCTCTTCCTCTATGTCACCGTCGCCACCGTCATCGGCCACAAGAAACAAACTGGACCATGCGACGGTGTTGGCCTTCTCGGCATAGCCTGGGCCTTCGGTGGCATGATCTTTGTCCTTGTCTACTGCACCGCTGGTATCTCTGGTGGACACATCAACCCTGCGGTTACTTTTGGACTGTTCTTAGCTCGAAAGGTGTCTCTGATTCGAGCTGTGTTTTACATGGTAGCACAGTGTTTGGGTGCTATTTGCGGTGTTGGGTTGGTGAAGGCTTTCATGAAGCACCCTTACAACTCCCTTGGTGGTGGTGCTAACTCCGTGGCTTCTGGCTACAACAAAGGCACTGCCCTCGGTGCTGAGATTATCGGAACTTTTGTGCTTGTCTACACCGTTTTCTCCGCCACCGACCCCAAGAGAAGCGCCCGTGACTCCCATGTCCCTGTTTTGGCTCCATTGCCCATTGGTTTTGCGGTTTTCATGGTTCATCTTGCTACCATACCCATCACTGGTACTGGGATAAACCCAGCTAGAAGCTTCGGTGCTGCTGTTATCTTCAACAATAGCAAAGTTTGGGATGACCATTGGATTTTCTGGGTTGGGCCATTTGTGGGAGCGTTGGCAGCAGCTGCATACCACCAGTACATACTGAGAGCTGCAGCGATCAAGGCATTGGGCTCGTTCCGAAGCAACCCCACCAACTAG 846 0.5177 MSKEVSEEGHQTHHGKDYVDPPPAPLIDLAEIKLWSFYRALIAEFIATLLFLYVTVATVIGHKKQTGPCDGVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLIRAVFYMVAQCLGAICGVGLVKAFMKHPYNSLGGGANSVASGYNKGTALGAEIIGTFVLVYTVFSATDPKRSARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNNSKVWDDHWIFWVGPFVGALAAAAYHQYILRAAAIKALGSFRSNPTN 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi338g00039 281 CDD MIP 39 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi338g00039 281 Pfam Major intrinsic protein 32 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi338g00039 281 NCBIfam MIP family channel protein 43 259 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi338g00039 281 PRINTS Major intrinsic protein family signature 167 185 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi338g00039 281 PRINTS Major intrinsic protein family signature 243 263 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi338g00039 281 PRINTS Major intrinsic protein family signature 81 105 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi338g00039 281 PRINTS Major intrinsic protein family signature 118 137 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi338g00039 281 PRINTS Major intrinsic protein family signature 203 225 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi338g00039 281 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi338g00039 281 FunFam Probable aquaporin PIP1-2 24 279 - -
Sebi338g00039 281 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 5 270 IPR034294 -
Sebi338g00039 281 SUPERFAMILY Aquaporin-like 31 265 IPR023271 -
Sebi338g00039 281 ProSitePatterns MIP family signature. 99 107 IPR022357 -
Sebi338g00039 281 Gene3D Glycerol uptake facilitator protein. 24 281 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi338g00039 Sebi-Chr338 603265 604418 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi338g00039 1 281 Major Intrinsic Protein MIP AT4G35100 91.103 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi338g00039 K09872 - thj:104804325 542.347