Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi338g00030 ATGGACGGCGATGTTGGGCGTTGGGCGTTGGAGTTCCTTCTTGGGAAGCCATTCAGAGTCACAGACAGTAACCTAATTAAGAGAATGATTTGCAGTATCCCTCTTTCAGACAACGATTCCTTCCTGAAGAAGTCTATTCTCCTCAAAACCCTTGAAGACGAGTTGTCCACCGTCTCTATTCAAGAGTCCATGCTTGAAATTCTCGAGATCCTAGAAGAAGTCCTTCGTTGCGATGGCTCTCCAATCACCGCCGCCATGAGAGCCGCATATTGTGGCGTTGCAGTGGAGTGTACTCTCAAGTATCTGGAACTCGAACTCTCCCACCCTGCCTACATCGACGCCGTCCAGAGGATATGGTCGGATAGGATATGCTACATGGAGCCCTCACGTTCTAGTGAAGGAAGCCTCTTGTTCTCCGCCGAATTGAACCGTTGGAGAATTGAGATTGAGGCTTCCCTTTCGGACTCGCGAGTCATGGACAGGTTGGCGGCCATACCGAATACCAGAAGGGACGCCATTAAAAAGATCAAGGCTTATTTGGCTGAAGCCTGGGCAAATATTGGTCCTTCTTTTCTTGATTTAGCATCAGTGTCCTTGCCCACAAATCAGGGCTTGCGCAGATTATTGCCCAATTCGGTGGCGACGAGTAATAATGTACCCACTGCTGAAGAATTCAGTGTGAGTGACTTGCCTGTGTCTCCAATAGAAATTTGGAAAGACAATCAACTGCTTAAAGACAAGAATTATACTACTACTGGTATTGAGGAAATGGACCCATCAACAACGTGTAGCAAAATTGACTCTCTGCCAAGTCATGAAGTCCAACAGGTTGGGGAATCTCTTGAATGCAATTCTATGGCATTGCACACCTTGACCAAGGATTCTCTGCCCAATTCATTGCATATGACTGACGTTGTAAGATCTGAGTTGACAGTTAAAGAAATAAATCAGGATCCACCTGTGGAAGAAAACAAGAGTAGTGATGCAGATGTAACTGATCCACATGCTTGCCAGGGTATTAACAATAATGAGGCTAATCTTAACAAGACAACTTCTGTCCATCACAGTGATGTTCAACACCCCAGCTTGATGGAACCAAATAGTACTGCTCGTACTCATGAGAGTATTAACAATAATGAGACTAATCTTAACAAGACAACTTCTGTCCGTCAGAGTGATGTTCAACGCCCTAGCTTGATGGAACCAAATAGTACCGCTCGTACTCATGAGTGGGATGATTCGATAGATGGCTTGCAAGGGGAAACATCAAATGATGCAAGAAGATTTCATTTACCTAGCCCAAAGAGGGAGAAACTTTCTCCATTGAAGAAGTATGAACCAACAAACATTACAAAAAGGAGAAAAGTAAAAAAATGGAGTGAGCTAGAGGAGGAGACTTTAAGGACTGCTGTAAATAAATTTGGCAAAGGAAATTGGAAATGGATTCTCAATTCTTACAGAGAGATATTTGAAAATAGAACTGACGTTGATTTGAAGGATAAGTGGAGAAATATGTCCCGGAATCTTGGTTTCCAGAGGATTGATGATTTTCTTTTGTTGCTTGGTCTATCCATGGTTTACTTTGGATGA 1590 0.434 MDGDVGRWALEFLLGKPFRVTDSNLIKRMICSIPLSDNDSFLKKSILLKTLEDELSTVSIQESMLEILEILEEVLRCDGSPITAAMRAAYCGVAVECTLKYLELELSHPAYIDAVQRIWSDRICYMEPSRSSEGSLLFSAELNRWRIEIEASLSDSRVMDRLAAIPNTRRDAIKKIKAYLAEAWANIGPSFLDLASVSLPTNQGLRRLLPNSVATSNNVPTAEEFSVSDLPVSPIEIWKDNQLLKDKNYTTTGIEEMDPSTTCSKIDSLPSHEVQQVGESLECNSMALHTLTKDSLPNSLHMTDVVRSELTVKEINQDPPVEENKSSDADVTDPHACQGINNNEANLNKTTSVHHSDVQHPSLMEPNSTARTHESINNNETNLNKTTSVRQSDVQRPSLMEPNSTARTHEWDDSIDGLQGETSNDARRFHLPSPKREKLSPLKKYEPTNITKRRKVKKWSELEEETLRTAVNKFGKGNWKWILNSYREIFENRTDVDLKDKWRNMSRNLGFQRIDDFLLLLGLSMVYFG 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi338g00030 529 Pfam Myb-like DNA-binding domain 457 504 IPR001005 -
Sebi338g00030 529 SUPERFAMILY Homeodomain-like 453 519 IPR009057 -
Sebi338g00030 529 PANTHER MYB TRANSCRIPTION FACTOR 1 374 - -
Sebi338g00030 529 MobiDBLite consensus disorder prediction 316 330 - -
Sebi338g00030 529 Gene3D - 448 508 - -
Sebi338g00030 529 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 451 510 IPR017930 -
Sebi338g00030 529 CDD SANT_TRF 457 507 - -
Sebi338g00030 529 ProSiteProfiles Myb-like domain profile. 451 506 IPR001005 -
Sebi338g00030 529 MobiDBLite consensus disorder prediction 312 439 - -
Sebi338g00030 529 SMART sant 455 508 IPR001005 -
Sebi338g00030 529 MobiDBLite consensus disorder prediction 336 405 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi338g00030 Sebi-Chr338 395727 399592 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi338g00030 401 512 Single Myb Histone (SMH) Gene Family AT1G15720 41.071 1.61e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sebi338g00030 Myb_DNA-binding 5.3e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi338g00030 - K11111 psat:127081272 445.662