Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi338g00004 ATGATAGTTGGTGGAAGATGTATTTTAGTGGGAATTGGAATTGATAGCCATAGCAAACAGTTGCTCAATTGGGCTCTTGTTAAAGTTGCTGAACCTGGGGACTCTGTTATTGCACTCCACATAGTTAAAACTCAAGATTTTGTTTCCGAGAGCAAAACCTTGGTTGATGATTATTTAGAGGTTTATGAAGGGTTATGCAATGTGAAAAAGATAGGTCTCTCCTGTGAGGTTTTGACAGGAAGTTCCATTCGAAACATTCTTGTCAACCAGGCAAAAACTCGTGCTGCTCTGGCTCTAGTCCTAGGGGGTAGAGCTTCCACAGCTAGATATTGCGCCAAACGACTACCACCCACCACCAATGTTATTGCTATCCAAGGTGCTAGAATTGTCTTCGGAAGGTGTACTAATAAACAACTAACAGGTTGTCTCATAGCGGATCCTAGACCAAGTCTTATTTGCACAGTGATCCGGTCTGCATTTGGTGAATCCGAGGTCAAGAGTGAGAAATCAACATGCCAAGATAACACAGAATTGGAGGAAGAAGCATTTGAGGGAGAGCAAAGTTGCAATAAAGTTTTATCAAGATCAATATCACAGTTTTCAGGTGACTCCACTCAGCAGAAGCTTGGGTGGCCCCTTCTCCGTAGGGCCTGTACAGATATAACACAGAGCCACGAGGATGCAAGGGACATGTCTGTAGTTCAATGGGTCATGAGCTTACCAGATCGTTCACCACAGAAAAATCCACTCATTAGGGACAATTCATCTGAAAGGGGCATCAGTAATATTGAGAATGAGAGCTATGAAACAGTTTCACCTCCATCACTTGAGCTGCCAAAGTGCCTGGAGGGGATTTTAAACATTAATACATTCAATAGCAAGTTGTTCAGCCTTGAGGTTCTTAAGTCTTGCGCTGGTCAATTTTCTTCAGAAAATCTGATTGGGAAAGGAGGGAGCAATCGTGTGTACAAAGGAATCCTCCCTGATGGGAAGCACATTGCAGTCAAAGTTTTACAGTCATCAAAAGAAGCCTTGAAAGATTTTGCCCGTGAGGTGGAGATAACATCCTCATTGAAACACAAAGGCATTACCCCTCTACTTGGAATTTGCATTGAGGACAGTGCTTTAATCTCTGTTTATGATTATTTCCCCAAAGGTAGCTTAGAGGATAATCTGAAAGAAATGGATATAGGCAAGAACAAGGATGGATCTTTCTTGTCATGGGAAGTCAGATTTAATGTAGCTGTTGGGATTGCTGAAGCACTCAATTACCTACACAACGAAACCTCAAAGCCTATTATACACAGAGATGTCAAGTCTTCCAACATTCTTCTTTCCAATGGGTTTGAGCCACAATTATCTGATTTTGGACTCGCTATATGGGGTCCAACAACTTCATCTTTTCTAACACAAGACGATGTAGTAGGAACATTTGGTTATCTTGCACCTGAATACTTCATGTATGGAAAGGTGAGTGACAAGATAGACGTCTATGCCTTTGGTGTAGTGCTACTTGAACTAATTTCAGGAAGGGAGCCAATCAGCTCTGAAACTTGCGAAGGACAGGAGAGTTTGGTTATGTGGGCAAAACCATTATTAGAGAGTGGGGATGTTGATAGCTTACTGGACCCAAATTTGCAAGGCAAGTTTGATGCCGCACAAGTGCAAAAAATGGTTCTGGTAGCATCTCTATGCATTACACGGGCTGCGCGGCTTCGTCCTACATTGAATCAGATACTGAAGATATTAAAAGGATATGATGAAAAAGTCGAGAACTTGTTTAGCTCCCACGAGAATGATCGTGACCATTCGGAAAATCAGGAAAATATTGATGATGAAGTGTATCCAAATTCAAGTGCAGAGTTACACTTGAGCCTTGCATTACTTGATGTTGACAATGACACTACATCATTTAGTAGTATAGAGCATAGCAAAAGTGAACATTTGAAAGAACGATGGAGCAGATCATCTAGTTTCAATTAA 1983 0.4145 MIVGGRCILVGIGIDSHSKQLLNWALVKVAEPGDSVIALHIVKTQDFVSESKTLVDDYLEVYEGLCNVKKIGLSCEVLTGSSIRNILVNQAKTRAALALVLGGRASTARYCAKRLPPTTNVIAIQGARIVFGRCTNKQLTGCLIADPRPSLICTVIRSAFGESEVKSEKSTCQDNTELEEEAFEGEQSCNKVLSRSISQFSGDSTQQKLGWPLLRRACTDITQSHEDARDMSVVQWVMSLPDRSPQKNPLIRDNSSERGISNIENESYETVSPPSLELPKCLEGILNINTFNSKLFSLEVLKSCAGQFSSENLIGKGGSNRVYKGILPDGKHIAVKVLQSSKEALKDFAREVEITSSLKHKGITPLLGICIEDSALISVYDYFPKGSLEDNLKEMDIGKNKDGSFLSWEVRFNVAVGIAEALNYLHNETSKPIIHRDVKSSNILLSNGFEPQLSDFGLAIWGPTTSSFLTQDDVVGTFGYLAPEYFMYGKVSDKIDVYAFGVVLLELISGREPISSETCEGQESLVMWAKPLLESGDVDSLLDPNLQGKFDAAQVQKMVLVASLCITRAARLRPTLNQILKILKGYDEKVENLFSSHENDRDHSENQENIDDEVYPNSSAELHLSLALLDVDNDTTSFSSIEHSKSEHLKERWSRSSSFN 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi338g00004 660 MobiDBLite consensus disorder prediction 640 660 - -
Sebi338g00004 660 PANTHER OS08G0249100 PROTEIN 169 611 IPR046958 -
Sebi338g00004 660 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672|GO:0006468
Sebi338g00004 660 MobiDBLite consensus disorder prediction 244 269 - -
Sebi338g00004 660 CDD USP_Like 8 116 - -
Sebi338g00004 660 Gene3D Phosphorylase Kinase; domain 1 282 382 - -
Sebi338g00004 660 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 7 116 - -
Sebi338g00004 660 SMART serkin_6 308 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi338g00004 660 SUPERFAMILY Protein kinase-like (PK-like) 290 583 IPR011009 -
Sebi338g00004 660 FunFam Putative receptor-like serine/threonine-protein kinase 383 599 - -
Sebi338g00004 660 Gene3D Transferase(Phosphotransferase) domain 1 383 613 - -
Sebi338g00004 660 MobiDBLite consensus disorder prediction 248 269 - -
Sebi338g00004 660 Pfam Protein kinase domain 309 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi338g00004 660 FunFam probable receptor-like serine/threonine-protein kinase At5g57670 277 382 - -
Sebi338g00004 660 ProSiteProfiles Protein kinase domain profile. 308 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi338g00004 Sebi-Chr338 41393 44478 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi338g00004 293 602 Trihelix Transcription Factor Family AT4G32710 44.136 2.75e-69 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Sebi338g00004 Pkinase 5.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi338g00004 - - gmx:100789189 885.174