Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi337g00025 ATGACATTAGAAGATGAAGGTGGCTCCAATGTGGGCTTCTTGTCTGATCATAACGACGCGGAGAAGATGATAAGCAACAACCAAAATGGATCAGAATTAGGAATTGTTGTGTTGAATAATAAGAGATCACTAAAAGGGAAGAATGTTGCAGTTGCTACTACAGATCAAGGGAATGATATTAATGATGGAAACACTACTCGTGATGCTGCTCATATATGGACTGAGAGAGAAAGAAGGAAGAAAATGAAGAACATGTTCTCTACCCTTCATTCTATGCTTCCTCACATTCCTCCAAAGGCGGATAAATCAACCATTGTAGATGAAGCAGTGAACTACATACAAAATCTTGAGCAAACTCTTGAAAAGCTAGAGAAGCAGAAACAAGAAAGGCTCCAATATGTGTCCACCAATGCTACTTTTGGGTGTGACTCATCTGTGATACACTCACAGTCACTGTGGCATCCCTATGACCCACCCTTGATAACTGCTGGTGATAAAGGATCATCTTCCAATAACAACTACTTGTCCAATATTACTGCAGTAAATGGAACTTCAAACAATAATGGATTACAGCCTGCAGTAGCATTTCAAACATGGACTTCTCCAAATGTGGTATTGAACATTTATGGAGATGTAGCACAATTCTGCATATGTGCAACCAAGAAGCCTGGCATCTTGACCACCATCACTTATGTGCTCGAGAAGTACAACATTGAAGTCCTATCTGCCAACATTTTGTCCAATAATGGAGATGCATACATGATTCAAGCCCATGCAAAACGAGCTTCAAACCAGTTCCAAGAAGCAAAATTAGTGGAGCAAATGTATAGGCAAGCAGCGAGGGAGATCACCCTATGGATCGCCTAA 867 0.406 MTLEDEGGSNVGFLSDHNDAEKMISNNQNGSELGIVVLNNKRSLKGKNVAVATTDQGNDINDGNTTRDAAHIWTERERRKKMKNMFSTLHSMLPHIPPKADKSTIVDEAVNYIQNLEQTLEKLEKQKQERLQYVSTNATFGCDSSVIHSQSLWHPYDPPLITAGDKGSSSNNNYLSNITAVNGTSNNNGLQPAVAFQTWTSPNVVLNIYGDVAQFCICATKKPGILTTITYVLEKYNIEVLSANILSNNGDAYMIQAHAKRASNQFQEAKLVEQMYRQAAREITLWIA 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi337g00025 288 Pfam Helix-loop-helix DNA-binding domain 69 117 IPR011598 GO:0046983
Sebi337g00025 288 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 131 IPR036638 GO:0046983
Sebi337g00025 288 Coils Coil 106 133 - -
Sebi337g00025 288 CDD bHLH_AtbHLH_like 71 124 IPR045239 -
Sebi337g00025 288 Gene3D - 59 132 IPR036638 GO:0046983
Sebi337g00025 288 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 38 286 IPR044278 GO:0003700|GO:0006355|GO:0009960
Sebi337g00025 288 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 66 116 IPR011598 GO:0046983
Sebi337g00025 288 SMART finulus 74 122 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi337g00025 Sebi-Chr337 1018087 1020924 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi337g00025 58 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 41.700 9.48e-49 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi337g00025 HLH 6.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi337g00025 - - gmx:102665879 236.113