Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi337g00021 ATGACATTAGAAGATGAAGGTGGCTCCAATGTGGGCTTCTTGTCTGATCATAACGACGCAGAGAAGATGATAAGCAACAACCAAAATGGATCAGAATTAGGAATTGTTGTGTTGGATAATAAGCAATCACTAAAAGGGAAGAATGTTGCAGTTGCTACTAAAGATCAAGGGAATGATATTAATGATGGAAACACTACTCGTGATGCTGCTCATATATGGACTGAGAGAGAAAGAAGGAAGAAAATGAAGAACATGTTCTCTACCCTTCATTCTATGCTTCCTCACCTTCCTCCAAAGGCGGATAAATCAATCGTTGTAGATGAAGCATCAATGTGGCATCCCTATGACCCACCCTTGATAATGGCTGGTGATAAAGGATCATCTTCCAATAACAACTACTTGTCCAATATTACTGCAGTAAATGGAACTTCAAACAATAATGGAATACAGCCTGCAGTAGCATTTCAAACATGGACTTTTCCAAATGTGGTATTGAACATTTATGGAGATGTAGCACAATTCTGCATATGTGCAACCAAGAAGCCTGGTATCTTGACCACCATCACTTATGTGCTCAAGAAGTACAACATTGAGGTCCTATCTGCCAACATTTTGTCCAGTAATGGAGATGCATACATGATTCAAGCCCATGTTAATTTGCTCCACATATAA 672 0.3914 MTLEDEGGSNVGFLSDHNDAEKMISNNQNGSELGIVVLDNKQSLKGKNVAVATKDQGNDINDGNTTRDAAHIWTERERRKKMKNMFSTLHSMLPHLPPKADKSIVVDEASMWHPYDPPLIMAGDKGSSSNNNYLSNITAVNGTSNNNGIQPAVAFQTWTFPNVVLNIYGDVAQFCICATKKPGILTTITYVLKKYNIEVLSANILSSNGDAYMIQAHVNLLHI 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi337g00021 223 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 66 116 IPR011598 GO:0046983
Sebi337g00021 223 Pfam Helix-loop-helix DNA-binding domain 69 103 IPR011598 GO:0046983
Sebi337g00021 223 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 109 IPR036638 GO:0046983
Sebi337g00021 223 CDD bHLH_AtbHLH_like 71 109 IPR045239 -
Sebi337g00021 223 Gene3D - 58 112 IPR036638 GO:0046983
Sebi337g00021 223 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 43 109 IPR044278 GO:0003700|GO:0006355|GO:0009960
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi337g00021 Sebi-Chr337 852666 854440 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi337g00021 151 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 51.389 1.13e-13 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi337g00021 HLH 2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi337g00021 - - rcu:8275281 156.762