Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi336g00010 ATGGCAAAAATCGCCTTAGGAACCACCCGAGAGGCCACTCAGCCTGATTGCATTCAAGCTCTAGTTGTTGAATTCATCGCCACCTTTCTCTTCGTCTTTGCTGATAAGCTAAGTGGAGATGCACTAGTGGGCTTGTTTTTTGTGGCCGTGACACATGCACTTGTGGTGGCTGTGATGATTTCCGCCGCACATATTTCTGGTGGCCATCTGAATCCTGCCGTGACCCTAGGCCTCCTTGCCGGTGGCCACATCACCGTCTTCCGTTCCATCTTGTATTGGATTGATCAATTGGTAGCATCTGCAGCAGCATGTTATCTTCTTCATTACCTCTCAGGGGGATTGACAACTCCAGCTCATACCCTTGCAGAAGGAGTAGGGTACGGTCAGGGTATAGTTTGGGAGATTGTGTTGACCTTCTCATTGTTGTTCACTGTATACGCAACCATGGTCGATCCAAAGAAAGGAGCACTTGCTGGGCTTGGACCAACACTTGTTGGGTTTGTAGTAGGGGCTAACATCCTGGCTGGTGGGGCATTCTCTGCTGCTTCAATGAACCCAGCAAGATCTTTTGGGCCTGCCTTGGTTAGTGGTAACTGGACTGATCACTGGGTTTACTGGGTTGGACCCCTCATTGGTGGTGGCCTTGCTGGCTACATCTATGAGACTTTCTTCATTGACAGAACTCATGTTCCACTCACACAAGAAGTTTAA 711 0.4909 MAKIALGTTREATQPDCIQALVVEFIATFLFVFADKLSGDALVGLFFVAVTHALVVAVMISAAHISGGHLNPAVTLGLLAGGHITVFRSILYWIDQLVASAAACYLLHYLSGGLTTPAHTLAEGVGYGQGIVWEIVLTFSLLFTVYATMVDPKKGALAGLGPTLVGFVVGANILAGGAFSAASMNPARSFGPALVSGNWTDHWVYWVGPLIGGGLAGYIYETFFIDRTHVPLTQEV 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi336g00010 236 ProSitePatterns MIP family signature. 69 77 IPR022357 -
Sebi336g00010 236 PANTHER AQUAPORIN-8 4 229 IPR034294 -
Sebi336g00010 236 SUPERFAMILY Aquaporin-like 11 232 IPR023271 -
Sebi336g00010 236 Pfam Major intrinsic protein 13 220 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi336g00010 236 CDD MIP 19 223 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi336g00010 236 PRINTS Major intrinsic protein family signature 166 188 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi336g00010 236 PRINTS Major intrinsic protein family signature 203 223 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi336g00010 236 PRINTS Major intrinsic protein family signature 133 151 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi336g00010 236 PRINTS Major intrinsic protein family signature 88 107 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi336g00010 236 PRINTS Major intrinsic protein family signature 51 75 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi336g00010 236 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Sebi336g00010 236 Gene3D Glycerol uptake facilitator protein. 2 234 IPR023271 -
Sebi336g00010 236 FunFam Probable aquaporin TIP1-1 2 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi336g00010 Sebi-Chr336 481784 483998 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi336g00010 1 235 Major Intrinsic Protein MIP AT2G25810 75.720 9.30e-124 349
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi336g00010 K09873 - gmx:100811447 427.943