Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi335g00024 ATGGAGATGGAGAGCATGAAAGAAGAAAACAAAGTTCTGAGGAAAGTGGTGGAACAAACAATGAAAGACTACTATGATCTACAAAGGAAATTTTCAATCATCCAGGAAAATAATAAAAGAAAGGATCATCAATTTTCTCTCTCACTCCAAGATAATGCAACCACCAGCGAGGAAGGAGGGTCGAAAATTCTTGAGATCTTTAATAAAATAATTCAAAGAGCTGATCCATCTCCACCAAACAGTACTGATGATAGTATAAGCGAGAGTGAATTGGGTTTATCACTGAGGTTGCAAACAAGCACAAGTACTCAAAAAGAGAAAGAGGGAAATGAAAAGGAAGATCAGAAAAAAGAGAATGAATTGGAAATTGCATCTGCAGTGGTGCAGAATAAATTTCAGCGTACACATGACTTGCCTGCAGGGATTACAACCCATGCTGCTTCCCCTCCTAACAGAAAGGCTAGGGTTTCGGTTAGAGCAAGATGTGAAGCTGCTACAATGAATGATGGGTGCCAATGGAGAAAATATGGGCAGAAAATTGCAAAAGGAAATCCATGTCCACGTGCCTACTATCGTTGCACCGTAGCTCCAGGATGCCCCGTTAGGAAACAGGTGCAAAGATGTATAGATGACATGTCCATACTAATTACAACCTATGAAGGAACACACAACCATCCACTCCCAGTTGGTGCAACTGCAATGGCTTCTACAGCTTCTGCAGCAGCTTCCTTTATGTTGCTAGACTCAAGCAATCCTATTTCAGATGCTTTCACCCATGCAACCCTTAATCCTTACAACACCTTCCACCCATTAAACCCACCTTCCAACATTAGAAGCATAAACCCTAATGATCCATCCCAAGGGATTGTTCTTGATCTCACCAATAATAATCTCAATGAACCTCCACGTTTTTCCAGTACTGGTAGCTCCTCCAAGATGACTGCAACAACTAATCCTCATTTTTCTTGGATGCCAAACAAGTACCAAAGTAGCAATACTACTATTGCAATGAACAATTTTCACAACCCTAGACTACCATTGGATCATGATCATAGGAATATTTGGAAAGGAGAAGAAAGTAATAAGCCATTGGAGGACAATGTGTCTGCAATTGCCTCAGATCCTAAGTTTAGGGTTGCTGTTGCAGCGGCTATAACATCACTCATGAATAAAGAGAGCCATATAGGGACTTCCTTTGGTCCTAGGAGTGGACAAAATGGTAGCTCTAGTAGCAACAATTGGGTCCTTGAATCTCTCTCAACAAATGGTAAGCCCAATTAA 1281 0.4098 MEMESMKEENKVLRKVVEQTMKDYYDLQRKFSIIQENNKRKDHQFSLSLQDNATTSEEGGSKILEIFNKIIQRADPSPPNSTDDSISESELGLSLRLQTSTSTQKEKEGNEKEDQKKENELEIASAVVQNKFQRTHDLPAGITTHAASPPNRKARVSVRARCEAATMNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQVQRCIDDMSILITTYEGTHNHPLPVGATAMASTASAAASFMLLDSSNPISDAFTHATLNPYNTFHPLNPPSNIRSINPNDPSQGIVLDLTNNNLNEPPRFSSTGSSSKMTATTNPHFSWMPNKYQSSNTTIAMNNFHNPRLPLDHDHRNIWKGEESNKPLEDNVSAIASDPKFRVAVAAAITSLMNKESHIGTSFGPRSGQNGSSSSNNWVLESLSTNGKPN 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi335g00024 426 Gene3D WRKY domain 152 229 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sebi335g00024 426 SUPERFAMILY WRKY DNA-binding domain 160 228 IPR036576 GO:0003700|GO:0006355|GO:0043565
Sebi335g00024 426 Coils Coil 3 23 - -
Sebi335g00024 426 ProSiteProfiles WRKY domain profile. 162 228 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi335g00024 426 MobiDBLite consensus disorder prediction 105 119 - -
Sebi335g00024 426 MobiDBLite consensus disorder prediction 73 119 - -
Sebi335g00024 426 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 2 404 IPR044810 GO:0003700
Sebi335g00024 426 FunFam probable WRKY transcription factor 31 152 229 - -
Sebi335g00024 426 SMART WRKY_cls 167 227 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi335g00024 426 MobiDBLite consensus disorder prediction 396 426 - -
Sebi335g00024 426 Pfam WRKY DNA -binding domain 168 226 IPR003657 GO:0003700|GO:0006355|GO:0043565
Sebi335g00024 426 MobiDBLite consensus disorder prediction 74 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi335g00024 Sebi-Chr335 760977 763332 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi335g00024 1 299 WRKY Transcription Factor Family AT1G68150 49.508 4.18e-84 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Sebi335g00024 WRKY 1.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi335g00024 - - var:108321024 571.622