Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi334g00016 ATGCCAGAATCAGAGGAAGAAAATCCTGACCTTCCTCCCAAGTCAAGGACACTGGAGGAACATGGATTTGCCATGGATTTTGATATTGACCTGGAAGGTTCATGGGCCTTGGATCATATATCTTTTGTCTCTAACCCCATGTCTCCTTTACTCTTATCCACCATGTCTGAACAACCTTTTTCTCCTGTTTGGGCCTTTTCTGATATTGAAGGTGACAGGCATGTCACTACTGCAGCATCAGGTAATACAAATACAGTAACTGAAAATCCAGTTGAAAATGGTGACAACAAAAAACCTGTGCCACACCTTGTAGCTCTTCCACCTTTAGAAAATCCAGATAGTTATTGTCTAATCAAGGAAAGAATGACACAAGCTCTTCGCTACTTCAAAGAGTTGACAGAACAGAATGTTCTTGCTCAGGTTTGGGCACCTGTGAGGAATGGAAATAGATATAAACTCACAACTTCAGGTCAACCTTTTGTTCTTGATCCACACAGTAATGGACTCCATCAGTATAGAACAGTTTCCTTGATGTATATGTTTTCTGTGGATGGTGAAAATGATGAAATTCTGGGACTTCCAGGTAGAGTTTTTCAGCAGAAATTGCCAGAATGGACTCCTAATGTTCAGTATTACTCTAGTAAAGAGTATTCACGCCTAAATCATGCTCAACATTACAATGTTCGTGGAACCTTGGCTTTGCCTGTGTTTGAACCTCCAGGCCAATCTTGTGTTGCTGTGCTGGAGTTGATAATGACTTCACAGAAGATTAACTATGCTCCTGAGGTTGATAAAGTCTGCAAAGCCCTTGAGGCAGTAAATTTGAGGAGTTCAGAAATTTTGGAGCATCCATACAGTCAGATTTGTAATGAAGATCGCCAGAATGCATTAGCAGAGATTTTGGAGATATTGACAGTTGTCTGTGAAACTCATAATTTACCTTTGGCACAAACATGGGTTCCCTGTAGGCATAGGAGTGTTTTGGCTCATGGTGGTGGTCTTAAGAAAAGTTGCTCTAGTTTTGATGGTTATTGCATGGGGCAAGTTTGTATGTCTATAACTGAGGTAGCATTCTATGTCATAGATGCTCATACATGGGGTTTCCATGAGGCCTGTGTTGAGCATCACTTACAACAAGGTCAAGGGGTTGCAGGGAGGGCATTTATGTCCCACAACATGTGCTTTTGTGGAAACATTACTCAATTCTGCAAAACTGATTATCCCTTAGTACATTATGCTCTTATGTTTGGGTTGACAAGCTGTTTTGCAATCTGTTTACAAAGCTCTCATACTGGAAATGATGATTATGTATTAGAGTTTTTCCTGCCTCCTCAGATCACAGACTTTAATGAACAAAAATCTTTGTTGGGATCCATATTGGCAACAATGAAGCACCATTTCCAGAGTCTTAAGGTTGCTTCTGGTGTTGAACTTGAGGAGGATGGTTCAATTGAAATTATAGAAACAATAAATGGAAGGGCTCATTTGAGCCTTGAATCTATTCCAATTACCTCATCTGCTAAATCACCACCTAGACATGATGCCTCACCAAATATAGGGGAGGGGGTCCCACTAGATCCATCAGAACAGCAATTAATGACATACTTTGATGACATAAATGATGGAGGGAATCTTGGTGATAATGCAGGTGGAAGCATAGATAAGATCTCTTCCTTAGAGACCAAAATCATAAAGCAACCATCACAGAGAAAACGCGGAAAAGCTGAGAAATCAATCAGTCTTGAAGTTCTGCAACAGTATTTCAGTGGGAGTCTTAAGGATGCTGCAAAGAGCCTTGGTGTTTGTCCTACTACAATGAAGCGCATCTGTAGGCAGCATGGGATATCCCGTTGGCCATCTCGAAAGATCAAAAAGGTTAACCGTTCCCTGTCCAAGCTCAAGTGTGTAATTGAATCAGTTCATGGTGCTGAAGGAGCATTTGGTTTGAATTCCCCAAGTACTAGTTCATTTCCCATTGCTGTTGGTTCCTTCACTGAACCATCTACTTCAAACAAGTTTGACCACCAAGCCTCATTAAGCATTGGACCATCAGAACCTAATATGAATGAAAATGATTTGGATGCTTCTAAAGTATCAGCAAAGAGCAGACAGGATGGAATTGAAGATCAATTTCTAGGAGCAAGGACACAAAGTCCTGAGAAAGTGATCAATGACAAAGGTGGATCCACTCAGGAGGTTGGCACTAAAGGCTCAAACAAGTTTAGGATTGGGAGTGGCTCAAGTGAAGGCAGTGCAAATCCTACTCCTCATGGCAGCCCCCCAAATGAAAGTTCTCCTCCAAAAGATATATTTAATATAACATGCAACAGTGAGCAATATTTTGTGTTAAGGGGATCACTGGAGCCAACACTGCAGCCAACTAGTACCTTGAACAGTGCAACTGCATACCCTATGCCTAATGTTGTGGTGACAGAACCTCAAGAACCATTTGGAGGATTGCTAATTGAGGGTGCTGATAGTTCTAAAGACTTGAGAAATCTGTGTTTTTCAGCAGATGCTGTTTTGGAGGATCAGGTTCCAGATGCTTGTGGGATTAATCCTCCATGTTCTGAATTGGCTCCTATCCAACACATGGATACTCTTAATAACACTATGACACCTTTTGCAGCAAGGAAAGAGATGAAGACTGTGACTATTAAAGCAACATATAGAGAAGATATCATAAGGTTTAGGGTCTCTGAGAACTGTGGCATTGTGGAACTAAAAGAAGAGATTGCCAAAAGATTGAAACTTGAGGTGGGTACATTTGATATCAAGTATCTGGATGATGATCATGAATGGATTTTGGTAGCCTGTGATGTAGACCTGCAAGAGTGCATGGACGTTTTAAGATCATCAGGCAGCAACATTATAAGGCTTGTGGTGCATGATGTAGTGTCCATTCTGGGAAGCTCTTGTGAGAGCTCTGGGGGCTGA 2937 0.4127 MPESEEENPDLPPKSRTLEEHGFAMDFDIDLEGSWALDHISFVSNPMSPLLLSTMSEQPFSPVWAFSDIEGDRHVTTAASGNTNTVTENPVENGDNKKPVPHLVALPPLENPDSYCLIKERMTQALRYFKELTEQNVLAQVWAPVRNGNRYKLTTSGQPFVLDPHSNGLHQYRTVSLMYMFSVDGENDEILGLPGRVFQQKLPEWTPNVQYYSSKEYSRLNHAQHYNVRGTLALPVFEPPGQSCVAVLELIMTSQKINYAPEVDKVCKALEAVNLRSSEILEHPYSQICNEDRQNALAEILEILTVVCETHNLPLAQTWVPCRHRSVLAHGGGLKKSCSSFDGYCMGQVCMSITEVAFYVIDAHTWGFHEACVEHHLQQGQGVAGRAFMSHNMCFCGNITQFCKTDYPLVHYALMFGLTSCFAICLQSSHTGNDDYVLEFFLPPQITDFNEQKSLLGSILATMKHHFQSLKVASGVELEEDGSIEIIETINGRAHLSLESIPITSSAKSPPRHDASPNIGEGVPLDPSEQQLMTYFDDINDGGNLGDNAGGSIDKISSLETKIIKQPSQRKRGKAEKSISLEVLQQYFSGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKIKKVNRSLSKLKCVIESVHGAEGAFGLNSPSTSSFPIAVGSFTEPSTSNKFDHQASLSIGPSEPNMNENDLDASKVSAKSRQDGIEDQFLGARTQSPEKVINDKGGSTQEVGTKGSNKFRIGSGSSEGSANPTPHGSPPNESSPPKDIFNITCNSEQYFVLRGSLEPTLQPTSTLNSATAYPMPNVVVTEPQEPFGGLLIEGADSSKDLRNLCFSADAVLEDQVPDACGINPPCSELAPIQHMDTLNNTMTPFAARKEMKTVTIKATYREDIIRFRVSENCGIVELKEEIAKRLKLEVGTFDIKYLDDDHEWILVACDVDLQECMDVLRSSGSNIIRLVVHDVVSILGSSCESSGG 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi334g00016 978 Pfam RWP-RK domain 578 626 IPR003035 -
Sebi334g00016 978 CDD PB1_NLP 884 964 IPR034891 -
Sebi334g00016 978 MobiDBLite consensus disorder prediction 722 758 - -
Sebi334g00016 978 Pfam PB1 domain 883 964 IPR000270 GO:0005515
Sebi334g00016 978 ProSiteProfiles PB1 domain profile. 883 965 IPR000270 GO:0005515
Sebi334g00016 978 MobiDBLite consensus disorder prediction 79 101 - -
Sebi334g00016 978 SUPERFAMILY CAD & PB1 domains 880 968 - -
Sebi334g00016 978 MobiDBLite consensus disorder prediction 668 695 - -
Sebi334g00016 978 ProSiteProfiles RWP-RK domain profile. 565 646 IPR003035 -
Sebi334g00016 978 PANTHER PROTEIN NLP8 56 977 IPR045012 GO:0003700
Sebi334g00016 978 MobiDBLite consensus disorder prediction 668 771 - -
Sebi334g00016 978 SMART PB1_new 883 965 IPR000270 GO:0005515
Sebi334g00016 978 Gene3D - 880 964 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi334g00016 Sebi-Chr334 516660 522292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi334g00016 252 977 NLP Transcription Factor Family AT4G24020 52.653 0.0 674
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Sebi334g00016 PB1 5.4e-19 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi334g00016 - - gmx:100780901 1585.08