Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi333g00005 ATGAGGTGGGATCTCTTTGAGTGCTGCTTCACTAACTGTTCTTCTGACACAATTCCAATTCCAAAGCGCAGAAAACTTGAGAATGGTCGTGAGATTGCAATCCAGCGCTTTAAGGAAGACAAGCGACACATATTGCAACGGTTCATTGATGAAACTATTATCCTAAATTACATGCCCCACAAAAACCTTGTGTCTATTTACGGGTGTTCCACTCATCACAAGGAATCCCTTCTAGTACATGAATACCTATCCAATGGAACTCTTGCTGCTCATCTTCAAGGCACAATAGCAGAAAGCAGAATATTACCTTGGCTTACCCGATTGAATATTGCCATTGATACTGCAAATGCATTGGACTATCTTCACTATAATGGCATCATACACCGTGATGTAAAGTCCAGCAATATTCTGCTTGATATTAACTCTTGTGCTAAAATTGCTAACTTTCATTTATCATGGAAGCTTCCAGAGGGAGTTTCTGTTGATAACACCCATGTTACAAGTGATATAATAGGAACATGTGGTTATATAGACCCAGATTATGTGTCAAAAGGCTTCCTTAATGTAAAAAATGATGTTTATAGTTTTGGGGTTGTGTTGTGTGAGCTTATGTCATCAAAGCTTGCAGAATATTGGGTTCAGAGTGAAGAGGATAGTCTTGCTACCCTTTTAAGCACAAAAGTTGAAAACCAAGCTTTGTTGGAGCTTTTAGATCCCAGACTTAACTTTCAATCAGAGATTAAGATGACACAGATGATTACTGCTACAGCTGAGCTCGCATCTAGGTGCTTGCAATGTCCACTAGAATTAAGGCCAAGCATGGAACAGGTGCTAGAGACTCTCAATGGCATAAAGCAAGGGAAATATGAAACAAGCCCGATGAAAGCTTTCAAGATCTTCCACCATGCTGAACTTGAAGAAGCTACTAACCATTTTAACACTTGCCTTGGAAAGGGAGGGTTCGGCACGGTCTACTATGGAAAACTTCAAGATGGGCGAGAGGTTGCAATAAAACGTTTCCATGAGGAGACAGACAAAACCATTAGGCAATTCATGAAAGAAATTGAGATCTTATGTCTCTTGCAACATCAAAATCTGGTTTCACTCTATGGTTGCAGTTCTCGTCATAGCATCAAACACATGCTAGTGTACGAGTACATCTCCAATGACACACTTTCTAAGCATCTTCATGAATCTTCTTGTGGTAAACTATCATGGCCTACTAGATTAAATATCACCATTGAAATTGCAACTGCTTTGTTATATCTCCATGACTCAGGGATCATCCACCGTGACATAAAAGGGAGCAACATTCTGTTGGATGAAAATTTTACTGTTAAAGTAGCAGATTTTGGACTCTCACGGTTTCTTCCGGATTATGTTACTCACGTTTCAACTATGCCAGTAGGAACTCGTGCTTACATAGATCCAGACTATTATGAATCTGGAAGGGTCAGTGACAAAAGTGATGTCTATAGCTTTGGGGTGGTCTTGTTTGAGCTCATATCATCCAAACCCCCAAGTTTAATGGAAGGCACAGAGCGCATTACTCTTGCCCAATTTGCAATGAGTAAAATCTTAAACAAGGCATTGGAGGAGCTAGTGGATCCATGTCTTGGGTTTGATTCTGACAAAAATATAATGGAAATGATAACAGCAGTGGCAGAGTTAGCATTTCAGTGCGTGCAGTGCCCCAAGGAACTCAGGCCATCCATGAAACAGGTGTTAGAGACCTTAGAGGGCATAAGGAAAGGGAAATGGGGATTCAATCAGATAACATAG 1782 0.404 MRWDLFECCFTNCSSDTIPIPKRRKLENGREIAIQRFKEDKRHILQRFIDETIILNYMPHKNLVSIYGCSTHHKESLLVHEYLSNGTLAAHLQGTIAESRILPWLTRLNIAIDTANALDYLHYNGIIHRDVKSSNILLDINSCAKIANFHLSWKLPEGVSVDNTHVTSDIIGTCGYIDPDYVSKGFLNVKNDVYSFGVVLCELMSSKLAEYWVQSEEDSLATLLSTKVENQALLELLDPRLNFQSEIKMTQMITATAELASRCLQCPLELRPSMEQVLETLNGIKQGKYETSPMKAFKIFHHAELEEATNHFNTCLGKGGFGTVYYGKLQDGREVAIKRFHEETDKTIRQFMKEIEILCLLQHQNLVSLYGCSSRHSIKHMLVYEYISNDTLSKHLHESSCGKLSWPTRLNITIEIATALLYLHDSGIIHRDIKGSNILLDENFTVKVADFGLSRFLPDYVTHVSTMPVGTRAYIDPDYYESGRVSDKSDVYSFGVVLFELISSKPPSLMEGTERITLAQFAMSKILNKALEELVDPCLGFDSDKNIMEMITAVAELAFQCVQCPKELRPSMKQVLETLEGIRKGKWGFNQIT 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi333g00005 593 ProSitePatterns Serine/Threonine protein kinases active-site signature. 126 138 IPR008271 GO:0004672|GO:0006468
Sebi333g00005 593 Pfam Protein kinase domain 24 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi333g00005 593 CDD STKc_IRAK 316 582 - -
Sebi333g00005 593 FunFam Wall-associated receptor kinase 3 387 592 - -
Sebi333g00005 593 Pfam Protein tyrosine and serine/threonine kinase 312 579 IPR001245 GO:0004672|GO:0006468
Sebi333g00005 593 SUPERFAMILY Protein kinase-like (PK-like) 24 283 IPR011009 -
Sebi333g00005 593 ProSitePatterns Serine/Threonine protein kinases active-site signature. 428 440 IPR008271 GO:0004672|GO:0006468
Sebi333g00005 593 ProSiteProfiles Protein kinase domain profile. 1 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi333g00005 593 Gene3D Phosphorylase Kinase; domain 1 19 82 - -
Sebi333g00005 593 Gene3D Phosphorylase Kinase; domain 1 300 386 - -
Sebi333g00005 593 SMART serkin_6 310 551 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi333g00005 593 SMART serkin_6 22 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi333g00005 593 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 297 586 IPR044652 GO:0004672
Sebi333g00005 593 SUPERFAMILY Protein kinase-like (PK-like) 291 583 IPR011009 -
Sebi333g00005 593 ProSitePatterns Protein kinases ATP-binding region signature. 316 338 IPR017441 GO:0005524
Sebi333g00005 593 Gene3D Transferase(Phosphotransferase) domain 1 83 299 - -
Sebi333g00005 593 Gene3D Transferase(Phosphotransferase) domain 1 387 588 - -
Sebi333g00005 593 ProSiteProfiles Protein kinase domain profile. 310 582 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi333g00005 Sebi-Chr333 37986 40223 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi333g00005 299 583 Receptor kinase-like Gene Family AT1G25390 55.326 5.09e-100 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Sebi333g00005 PK_Tyr_Ser-Thr 1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi333g00005 - - gmx:102666805 898.656