Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi333g00004 ATGATTGCTGAGAATCTTGCAGAGGTGTTTTCTTCTTCTACTGCTGCAACAACCACTCCTTCATTCTCATCTGCATTTGCCGCTGCTCCATCCTCTACGCTGCTCTCTGCTACAGAGCGTCCTCCTCCCTTGGTCTCTATTCTACACAAGGATTTATTCTTCGTTACTGATATTTGCAAAGGATCTGCAGCGAAATTGGAATGGAAATCGTCACCAGATCCGTTCATTTTTGGAAGCTTTGAATTAAAAGAATATCAAACGCCACAGAATGTCATTGCTCGCTTCAATGGCGGTCAGCAGCAGCTTCCCTCCGCCGTTGCGTGTCCGCCTCCTCCGGCTTCTCCCCAACGCCGTCCTTCTTCCGGATTTGCTCTTACATCTCCTTCTCGTTCTTGGCAGCCCGCTTCTTCTGGTCGCAGTGGTCCATCCCCGTGCGGAACTCTCGAAACCGAAGTCAACCTAACCGTCTACGAGATCTTCGTCGCCACTTGTCGCACCTCCTCTGGTAAGCCTCTAAGTTTCGTTCCCAAATCGTCCTCGAACTCTAAGAATTTCGTGGCAGAAAAGGATCTGTGTACACAGCTTCAGTTTGATGAAAGGTTCACTGCTATTGGAGCTCGTATACCGAAAGGATTTGACAGTGGTGGCTACAACATCAAGACCGGACCTGACTATTCAATTGAACTCATGAAATTTGATATGAGTGGTTCAACTGATGCCATTAAAGTTGGTCCCTATAGCTTGCCAGGAGCCCGAGCAGGAGGTTTTGGGGGTCAGGTTATTCTTCCACTAGCTTACACGATTGAGCATGAAGAGTTCATGGAGGATAATAATTGCCCACTTGATTCTGTTACTTACAATGAGCTTGTGGCAGCATATGTAAGAGCTGGGTATCATGATGATGGTGATGCTGTTATTGATACAATGACAAGCAAAGGAATAATGCCAAATGCTATCACTTATACCACTGTAATAAATGCCTATGCTAAGACAGGAAAGGGGGACAAGGCGTTGAAGTTGTTCAACCAGATGAAGGAATTGGGTTGTGTTACAGATCGTTGGGGGCCAGGAAAGATGGAACTTTGTCTTGGAGAACCTGGTGCAGCTGTGATGCTGGCAGAGTTAGCAATAGAAGTTGTTTTTGGTGTCCTTTCTTGGTTTCAAGTTGGTATTGGTTAA 1179 0.4623 MIAENLAEVFSSSTAATTTPSFSSAFAAAPSSTLLSATERPPPLVSILHKDLFFVTDICKGSAAKLEWKSSPDPFIFGSFELKEYQTPQNVIARFNGGQQQLPSAVACPPPPASPQRRPSSGFALTSPSRSWQPASSGRSGPSPCGTLETEVNLTVYEIFVATCRTSSGKPLSFVPKSSSNSKNFVAEKDLCTQLQFDERFTAIGARIPKGFDSGGYNIKTGPDYSIELMKFDMSGSTDAIKVGPYSLPGARAGGFGGQVILPLAYTIEHEEFMEDNNCPLDSVTYNELVAAYVRAGYHDDGDAVIDTMTSKGIMPNAITYTTVINAYAKTGKGDKALKLFNQMKELGCVTDRWGPGKMELCLGEPGAAVMLAELAIEVVFGVLSWFQVGIG 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi333g00004 392 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 272 352 - -
Sebi333g00004 392 Gene3D Tetratricopeptide repeat domain 268 354 IPR011990 GO:0005515
Sebi333g00004 392 Pfam PPR repeat family 282 330 IPR002885 -
Sebi333g00004 392 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 282 316 IPR002885 -
Sebi333g00004 392 NCBIfam pentatricopeptide repeat 284 318 IPR002885 -
Sebi333g00004 392 NCBIfam pentatricopeptide repeat 319 352 IPR002885 -
Sebi333g00004 392 MobiDBLite consensus disorder prediction 119 144 - -
Sebi333g00004 392 MobiDBLite consensus disorder prediction 102 144 - -
Sebi333g00004 392 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 317 351 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi333g00004 Sebi-Chr333 30077 31255 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi333g00004 240 275 Homeobox Transcription Factor Family AT1G52150 80.556 1.85e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi333g00004 K17710 - cave:132190440 133.65