Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi332g00054 ATGGCTCGGAGGATGCTGAAACTTGCCTATATCTCTGATGAGGCGACAAGGAAAGCAACATACATGAAAAGGAAGAAGGATATCCTAAAGAAGATGGATGAACTCACCACACTCTGTGGGGTTTTCGCATGTGTTATAATTTTCAGTCCCTTTGATTCTCAGGTAGATGTTTGGCCAAACCTAGAGGGAGCCAAGCAGGTGATTGAGAGGTATAAGAATACACATATGATAGAGGAAAGCAAAAATGTGAACCGAGAGAGCTTTCTCACAAAGATGATTGCCAAAGGCCAAGATCGCTTGAAGAAGATGCGTCAAGACAATCGTGAAAAGGAGCTAACCGAGGTTGTGTTCAAATATATGCGAGATAAAACCCTTCCAAACATTCCCTTTGGGGATACGAACGATCTCAATAAGGCTGCTGACATGCCCTTTGAAGGTCTGATTGATCTAAATGAGTTGCCATACATGCCCTTCGAAGATGCAAATGATCTCAACAAGCTGATTGAGAAGAATTTTGAATGA 522 0.4215 MARRMLKLAYISDEATRKATYMKRKKDILKKMDELTTLCGVFACVIIFSPFDSQVDVWPNLEGAKQVIERYKNTHMIEESKNVNRESFLTKMIAKGQDRLKKMRQDNREKELTEVVFKYMRDKTLPNIPFGDTNDLNKAADMPFEGLIDLNELPYMPFEDANDLNKLIEKNFE 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi332g00054 173 Coils Coil 93 113 - -
Sebi332g00054 173 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Sebi332g00054 173 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Sebi332g00054 173 SUPERFAMILY SRF-like 1 82 IPR036879 GO:0003677|GO:0046983
Sebi332g00054 173 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Sebi332g00054 173 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sebi332g00054 173 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sebi332g00054 173 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sebi332g00054 173 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sebi332g00054 173 CDD MADS_SRF_like 2 84 IPR033897 GO:0000981|GO:0000987|GO:0045944
Sebi332g00054 173 PANTHER MADS BOX PROTEIN 7 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi332g00054 Sebi-Chr332 908913 909434 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi332g00054 1 169 Type I MADS-box Gene Family AT5G48670 39.412 8.19e-32 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi332g00054 SRF-TF 2.6e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi332g00054 - - gmx:100792290 154.066