Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi332g00047 ATGCGGAGGAACAGTCCAGGATACTACAGTCCTCCTCGGAGAGGATATGGAGGCAGAGGACCTAGTAGGAGGGGATACGGTGGAGGCAGGCGCAGGGAAAACAACAACGGAAGCCTTTTGGTTCGGAACATTCCCCTTGATTGCAGAGCCGAAGAGCTTCGTGTTCCCTTTGAGCGGTTCGGACCTGTTCGTGATGTCTACATACCAAAGGATTATTACTCTGGTGTTAGAATGAAGCTCCACTTTTTTCCCCATACAGAGAAACCCCGAGGCTTTGCATTTGTGCAGTTTGTGGATTCTTATGATGCCTCAGAGGCCCAGTACCATATGAACAGACAGATTTTTGCTGGAAGGGAAATATCTGTAGTTGTGGCTGCAGAGACAAGAAAAAGACCAGAGGAGATGCGCCATAGGACTAGAGTCAGAGGACCAGCGAGCTATGGGGGGCAAAGGTCTTCTTATTACGGGCGTTCCCGATCTCGCTCAATACCAGATCACGCTCACCACCTTATCACTCCGGTTCTAGAAATCGATATCGCTCAAGGCAAGTCCTTTTCTCCTGTTCCAAGACGGCAAATGGAGTACTCAGTTTCCCCTAGAAGGCAAGCAGAGCACCCTAGATCACCTAGAGGTCCTCCTGGAGAGCGAGATGATGATCATAAGCGCAGGTCATATTCTCCAGCTTATGGCAATGGTGGGGATCAGAATCAAAGCAATGGATATGCTGAGTGA 732 0.4959 MRRNSPGYYSPPRRGYGGRGPSRRGYGGGRRRENNNGSLLVRNIPLDCRAEELRVPFERFGPVRDVYIPKDYYSGVRMKLHFFPHTEKPRGFAFVQFVDSYDASEAQYHMNRQIFAGREISVVVAAETRKRPEEMRHRTRVRGPASYGGQRSSYYGRSRSRSIPDHAHHLITPVLEIDIAQGKSFSPVPRRQMEYSVSPRRQAEHPRSPRGPPGERDDDHKRRSYSPAYGNGGDQNQSNGYAE 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi332g00047 243 MobiDBLite consensus disorder prediction 197 225 - -
Sebi332g00047 243 FunFam Serine/arginine-rich SC35-like splicing factor SCL30 isoform A 30 170 - -
Sebi332g00047 243 Gene3D - 30 162 IPR012677 -
Sebi332g00047 243 MobiDBLite consensus disorder prediction 1 36 - -
Sebi332g00047 243 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 37 222 - -
Sebi332g00047 243 SMART rrm1_1 38 123 IPR000504 GO:0003723
Sebi332g00047 243 SUPERFAMILY RNA-binding domain, RBD 34 156 IPR035979 GO:0003676
Sebi332g00047 243 MobiDBLite consensus disorder prediction 131 161 - -
Sebi332g00047 243 MobiDBLite consensus disorder prediction 229 243 - -
Sebi332g00047 243 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 127 IPR000504 GO:0003723
Sebi332g00047 243 MobiDBLite consensus disorder prediction 185 243 - -
Sebi332g00047 243 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 120 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi332g00047 Sebi-Chr332 856927 859621 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi332g00047 20 111 Eukaryotic Initiation Factors Gene Family AT3G11400 34.783 4.24e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi332g00047 K12900 - gmx:100804294 293.123