Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi332g00023 ATGAGTTTTGTTTTTCGAGGAACGAGAGCAGATATAGAAAGTGGATTTCCCGGATTTACGCCTGAGCGGCGTGCATTGCGTGTTCATGGAGCTGGAGCACGTCCAAGTAATTCCAATTCACTCACTTTTCTTGTCACAGTTCTTCTGTTATTCATGATACTGAACTCCCACCAGATGTCACCAAATTTTCTGCTCTGGCTGGTGCTTGGTGTTTTCTTGATGGCTACAATGTTAAGGATGTATGCAACATGTCAACAGCTACAAGCTCAGGCCCAAGCTCATGCAGCAGCAGCAAGTGGGCTTCTTGGTCACACTGAACTACGGTTGCATATGCCACCATCAATAGCACTTGCAACTAGGGGGCGCCTGCAAGGCCTCAGACTTCAACTCGCACTTCTTGATCGGGAATTTGATGATTTAGATTATGAAACACTAAGAGCTCTGGATTCAGATAATGTTCCTACTACACCTTCTATGACTGAAGAAGAGATAAACTCTCTTCCTGTCCATAAATACAAGGTTTCTGGTCCACAAAACAGTGGATCCTCAATGCAACTGGCTTCATCCTCCACTCCTGGCGAGAAGAAGCAAGATAGTTCTAGTGCAGTTGGGAGCATGAAAGCTTCCGATGATGAGCTGACTTGCAGTGTATGTCTGGAGCAAGTAAATGTTGGAGATATGCTTCGTAGCTTGCCCTGCTTGCACCAGTTTCATGTCAATTGCATTGATCCCTGGCTAAGGCAACAAGGAACATGCCCTGTCTGTAAATTCAGAGCAGGGTCTGGGTGGCATGAAAGTGGACAAAATGATATCGGGGACATGGTTTGA 828 0.4577 MSFVFRGTRADIESGFPGFTPERRALRVHGAGARPSNSNSLTFLVTVLLLFMILNSHQMSPNFLLWLVLGVFLMATMLRMYATCQQLQAQAQAHAAAASGLLGHTELRLHMPPSIALATRGRLQGLRLQLALLDREFDDLDYETLRALDSDNVPTTPSMTEEEINSLPVHKYKVSGPQNSGSSMQLASSSTPGEKKQDSSSAVGSMKASDDELTCSVCLEQVNVGDMLRSLPCLHQFHVNCIDPWLRQQGTCPVCKFRAGSGWHESGQNDIGDMV 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi332g00023 275 SUPERFAMILY RING/U-box 210 258 - -
Sebi332g00023 275 Pfam Ring finger domain 214 256 IPR001841 -
Sebi332g00023 275 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 192 261 IPR013083 -
Sebi332g00023 275 ProSiteProfiles Zinc finger RING-type profile. 215 256 IPR001841 -
Sebi332g00023 275 MobiDBLite consensus disorder prediction 151 206 - -
Sebi332g00023 275 CDD RING-H2_PA-TM-RING 214 256 - -
Sebi332g00023 275 PANTHER TARGET OF ERK KINASE MPK-1 1 261 - -
Sebi332g00023 275 SMART ring_2 215 255 IPR001841 -
Sebi332g00023 275 MobiDBLite consensus disorder prediction 172 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi332g00023 Sebi-Chr332 407392 410419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi332g00023 1 275 C3H Transcription Factor Family AT3G55530 77.338 2.86e-143 401
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi332g00023 K16283 - gmx:100777936 446.047