Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi332g00020 ATGTCTTCACAATATTGGTGTTACAGGTGCAATCGATTCGTAAGGGTATGGAGGCTAGACATGCCAAATTGTCCCGATTGCGACAGTGGATTTGTTGAAGAGATTGAAAATCCTCATGTAAACATAGATGGCCGGCGCCGGAGGTTCCCACCGGCGGCGACCATGTACATGATCGGCCACCGCCATGATCAGAATTCTGGTCCAAATCACAGGAGACATTGCATAAACTCGGGCGGCGGTGACCGTTCACCGTTCAATCCAATCATCATGCTTCGCTCATCAGAAGGAACGAGTCGTGATCGTGGTGGCTTTGAGCTTTTCTATGATGATGGTGTCGGTTCTGGCCTTAGGCCTTTGCCTCCAAGGATGTCAGAGATTCTCTTAGGATCTGGATTTGACAGAGTGATGGAACAAATTTCTAATGTTGAGAACAATGGAGGAGGTATTGGAAGACACGACCAACAACAACCTCCTCCAGCATCAAAAGTCATTGTGGATTCCTTGCCGATAATAAAGATTGATGAGGCCCACATCGCCACGGAATCACATTGTGCCATTTGCAAGGAGACTTTTGAAATTGGAATCACTGCAAGAGAATTGCCTTGCAAACACATATACCACAATGAATGCATCCTCCCCTGGCTTGCGATTCGTAATTCCTGCCCTGTTTGTCGCCATGAATTGCCTTTAGAACCAAACAACAACACATCATCATTAGTTCAGAACCAACAAACAAGTGAGTTGGAGAATGTGGGGTTGACAATTTGGAGGTTACCGGGTGGTGGTTTTGCGGTGGGAAGGTTTTTAGGTGGAAGAAGAAGGGGAGATGATAGGGGGGTTCCTGTTATTTACACAGAGGTAGATGGTGGATTTAACATTAATGGGGTTGAGCCAATTAGAAGGATTTCTTGGTCAGTTTCATCATCTAGAGGGAGAAGGAATGGTGGTGGGTTGAGAAGAATGTTTAGCAATATGTTTGGTTGTTTTAGAGGTGGTGGAGGAGTTAGGCCTCAACGCTCTGTTTCTCCTATAGCATATTCTCAACCCATGAGATTAAGAAGTAATAGTGTATCTCAGGCCAATGTGGATCCTTCTCCTCGTTCTCGCAGGACTTGGTCTATGGATGTAAACAGTGGAATGAGACCATGGTAA 1152 0.4557 MSSQYWCYRCNRFVRVWRLDMPNCPDCDSGFVEEIENPHVNIDGRRRRFPPAATMYMIGHRHDQNSGPNHRRHCINSGGGDRSPFNPIIMLRSSEGTSRDRGGFELFYDDGVGSGLRPLPPRMSEILLGSGFDRVMEQISNVENNGGGIGRHDQQQPPPASKVIVDSLPIIKIDEAHIATESHCAICKETFEIGITARELPCKHIYHNECILPWLAIRNSCPVCRHELPLEPNNNTSSLVQNQQTSELENVGLTIWRLPGGGFAVGRFLGGRRRGDDRGVPVIYTEVDGGFNINGVEPIRRISWSVSSSRGRRNGGGLRRMFSNMFGCFRGGGGVRPQRSVSPIAYSQPMRLRSNSVSQANVDPSPRSRRTWSMDVNSGMRPW 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi332g00020 383 FunFam E3 ubiquitin-protein ligase RING1-like 149 231 - -
Sebi332g00020 383 SMART ring_2 184 224 IPR001841 -
Sebi332g00020 383 MobiDBLite consensus disorder prediction 353 383 - -
Sebi332g00020 383 Pfam zinc-ribbon 4 35 IPR039525 GO:0061630
Sebi332g00020 383 ProSiteProfiles Zinc finger RING-type profile. 184 225 IPR001841 -
Sebi332g00020 383 Pfam Protein of unknown function (DUF1117) 251 340 IPR010543 -
Sebi332g00020 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 230 IPR013083 -
Sebi332g00020 383 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 108 229 - -
Sebi332g00020 383 MobiDBLite consensus disorder prediction 353 375 - -
Sebi332g00020 383 Pfam Ring finger domain 183 225 IPR001841 -
Sebi332g00020 383 SUPERFAMILY RING/U-box 164 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi332g00020 Sebi-Chr332 360305 361456 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi332g00020 116 234 C3H Transcription Factor Family AT5G01980 39.496 3.41e-23 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi332g00020 K11982 - gmx:100789228 411.379