Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi332g00002 AACAAGCCGAAGCCGCCGGTGGTGATAACGAAGGAGAGTCCCAACGCGCTTCGGAGCCACATCTTGGAAATCAGCAACGGAAGCGACGTCGCTGAGTGCATCTCCACCTTCGCCAACCGCCGCCACCGCGGCGTGTCGGTGCTAAGCGGCAGCGGCGTCGTAACCAACGTGACTCTCCGGCAACCGGCGGCTCCCGGTGGGGTGATCACCCTACAAGGGAGATTTGAGATTCTGTCCCTCTCCGGCGCGTTTCTGCCGGCGCCGTCACCGCCGGAGGCTACCGGACTGACGGTGTACTTGGCCGGAGGTCAGGGTCAGGTGGTCGGAGGAACAGTTGTGGGGTCATTAGTAGCTTCAGGGCCTGTTATGGTGGTTGCAGCTACTTTTGCTAATGCTACTTATGAGAGGTTACCAATAGATGATGAACAGGGTGAAGAGGACAACAATATGCAAGTGCAGCAACAACAAGAGGGTTTAGGGGAACAACAACAACAACAGGTTTCAATGCCAGTTTACAATTTGAATCCTAATTTGCTACCAAATGGTCAAATGCCACATGATGTGTTTTGGGGTCCTCCTTCTCGCCCTTCTCCACCTTCCTTTTGA 606 0.5479 NKPKPPVVITKESPNALRSHILEISNGSDVAECISTFANRRHRGVSVLSGSGVVTNVTLRQPAAPGGVITLQGRFEILSLSGAFLPAPSPPEATGLTVYLAGGQGQVVGGTVVGSLVASGPVMVVAATFANATYERLPIDDEQGEEDNNMQVQQQQEGLGEQQQQQVSMPVYNLNPNLLPNGQMPHDVFWGPPSRPSPPSF 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi332g00002 201 SUPERFAMILY AF0104/ALDC/Ptd012-like 14 142 - -
Sebi332g00002 201 FunFam AT-hook motif nuclear-localized protein 17 145 - -
Sebi332g00002 201 ProSiteProfiles PPC domain profile profile. 14 151 IPR005175 -
Sebi332g00002 201 MobiDBLite consensus disorder prediction 145 165 - -
Sebi332g00002 201 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 191 IPR014476 GO:0003680
Sebi332g00002 201 MobiDBLite consensus disorder prediction 148 165 - -
Sebi332g00002 201 Gene3D - 17 157 - -
Sebi332g00002 201 Pfam Plants and Prokaryotes Conserved (PCC) domain 18 130 IPR005175 -
Sebi332g00002 201 CDD DUF296 18 101 IPR005175 -
Sebi332g00002 201 PIRSF ESCAROLA 1 200 IPR014476 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi332g00002 Sebi-Chr332 22373 23029 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi332g00002 1 201 AT-hook Motif Nuclear Localized (AHL) Family AT3G55560 59.906 1.93e-67 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi332g00002 - - qsu:112039774 270.396