Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi331g00073 ATGCATTTGGGGCATCATCACTTGCCGGTGCTTTCCTTCTTTCTAGGTGGTGATCATATCATGACAAATCCAGGAGCAGGAGGCAAAGATCAGCCACCTGAACTGAAAAAGCAAGAGAAACTCCAGTTTTCAGGGGATGAGAGAGTCACCAAGTCTTCATGCTCATCTGCCTCACCTCGCGGTATACCAGAGCTGTATGAGGAGAAGGCTCAGAATTTAAGGGCCTTCTCCTTCACAGAGCTCAAACGTGCAACAAATGATTTCAGCAGGCTTCTTAAGATAGGAGAAGGTGGATTTGGAAGTGTATTTAAAGGTTCAATCAAGCCTGTTGACGGGAATGGTGATCCTGTTTTAGTTGCCATCAAAAGGCTTAACAAGGATGCATTACAGGGTCATAAGCAATGGTTGACTGAAGTTCAGTTTCTTGGTGTTGTGGAGCACCCAAATCTTGTCAAGCTTATTGGATACTGTGCTTTGGATGGTGAAAGAGGCATCCAGAGACTACTTGTGTATGAATACATGCCGAATAAAAGCTTAGATTTTCATCTTTTCAATAAAGCATGTGATCCTCTTCCTTGGAAAACAAGACTTGAAATAGCACTTGGAGCAGCTCAAGGGTTATCTTATTTGCATGAAGAATTAGAAATTCAGGTCATATATCGAGATTTTAAATGTTCAAATGTACTACTGGATGAAAATTTTAAGCCAAAACTTTCTGATTTTGGACTTGCTAGGGAGGGACCAGTAGCTGGGAATACTCATGTTTCAACTGCTGTGATGGGAACATATGGTTATGCTGCTCCAGATTACATAGAAACTGGCCATCTCACTGCCAAGAGTGATGTGTGGAGTTTTGGTGTGGTGCTATATGAAATACTCACCGGGAGGCGTTCATTGGAAAGAAACAGGCCCAAAACAGAGCAGAAACTTTTGGAGTGGGTGAAGCAATATCCTCCTGATAGCAAAAAGTTTGATTTGATAATGGATGCAAGACTTGAAGGACAATATTCCATTAATGTAGCACGAAAATTCGCCAAACTCGCGGATCATTGCCTGCGTAAGAGTGCGAAAGATCGGCCAGCAATGAGTCAGGTGGTAGAGAGATTGAAGCAGATAATCCAAGATGAAGAACACCCTGAAGAGAAAAGCATTGAGGTATCTGAAAATGATCCAGTTGAGCCTGAAGAAAAGTCAAGTGAATCAGCCTCTTCAGAGTTATGGAAAAAGAGGATGGAACATCTTGCAAAACTTGGTGAGCATGTAGAGAGTGCTAGTAGGAGAAGATTTATGATCCTTCAGAGAGCCAATGTGTCTTCATAG 1320 0.422 MHLGHHHLPVLSFFLGGDHIMTNPGAGGKDQPPELKKQEKLQFSGDERVTKSSCSSASPRGIPELYEEKAQNLRAFSFTELKRATNDFSRLLKIGEGGFGSVFKGSIKPVDGNGDPVLVAIKRLNKDALQGHKQWLTEVQFLGVVEHPNLVKLIGYCALDGERGIQRLLVYEYMPNKSLDFHLFNKACDPLPWKTRLEIALGAAQGLSYLHEELEIQVIYRDFKCSNVLLDENFKPKLSDFGLAREGPVAGNTHVSTAVMGTYGYAAPDYIETGHLTAKSDVWSFGVVLYEILTGRRSLERNRPKTEQKLLEWVKQYPPDSKKFDLIMDARLEGQYSINVARKFAKLADHCLRKSAKDRPAMSQVVERLKQIIQDEEHPEEKSIEVSENDPVEPEEKSSESASSELWKKRMEHLAKLGEHVESASRRRFMILQRANVSS 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi331g00073 439 ProSitePatterns Protein kinases ATP-binding region signature. 94 122 IPR017441 GO:0005524
Sebi331g00073 439 MobiDBLite consensus disorder prediction 377 405 - -
Sebi331g00073 439 ProSiteProfiles Protein kinase domain profile. 88 373 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi331g00073 439 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 174 383 - -
Sebi331g00073 439 Gene3D Transferase(Phosphotransferase) domain 1 174 394 - -
Sebi331g00073 439 SUPERFAMILY Protein kinase-like (PK-like) 71 369 IPR011009 -
Sebi331g00073 439 PANTHER OS01G0588500 PROTEIN-RELATED 55 373 - -
Sebi331g00073 439 CDD STKc_IRAK 94 372 - -
Sebi331g00073 439 Pfam Protein tyrosine and serine/threonine kinase 93 369 IPR001245 GO:0004672|GO:0006468
Sebi331g00073 439 Gene3D Phosphorylase Kinase; domain 1 62 173 - -
Sebi331g00073 439 MobiDBLite consensus disorder prediction 42 61 - -
Sebi331g00073 439 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi331g00073 Sebi-Chr331 974641 979433 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi331g00073 74 407 Glycoside Hydrolase AT3G07070 45.507 1.13e-92 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Sebi331g00073 PK_Tyr_Ser-Thr 6.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi331g00073 - - gmx:100784625 701.049