Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi331g00004 ATGAAAACCACCCTACCAAGAGTGGTTCGTATCACAGTAACAGATCACTTTGCCACAGACTCTTCCAGTGACGAAGAAGAAGCATTAGAACATCTCCCTAAGGCAAAGAGAATAGTGAATGAGATCAGAATCAGAGAAACAACTCTGTCTCACACAATTGGTGGTAACAACAATAAGAGACATGAAGATAATGTTAATCGAAGTTCTCTGAATAATCAGAGACCTAAACAAGATTCAAATGCTCACAACAACCACAAATATCGCGGCGTTCGTCAACGGCCATGGGGAAGATGGGCGGCGGAGATTAGAGATCCTCTGAGGCGATCGAGAGTGTGGCTTGGGACTTACGATACGGCGGAAGAAGCTGCTATGGTCTATGACAGAGCAGCTATTCATTTTAGAGGCGCTGATGCTGTTACGAATATTATAAAACCGCCTCCGAGAGAGAAATCTATACCGGAATGTGATGAAACTGAATCGGTTAATTGTGATAAAGAAGAATATGGCGGTGGTGTATCTTCGTCTTCTTCTCCTACCTCTGTGACTGTTCTTGTTTCTAGGCCTTTAAATGAGTGGATGCATATGGAAGAATGGTTTAGAGAGTTAAGTGGTGAAGAATTGTGCTTGGAGGATTCACTTGGTGGTTCTTGTCCTCTTTATGAACCTCTTCCTTTATTAGTTTCCAATCATAGTGATATTGATGTTCCTTTTAGTCTTGATAAGGATTTTGAATCGTGTAAATGGGATGTAGATGGTTACTTTAATGATCCTTTGTTACTCTCAACCATGTAA 792 0.4116 MKTTLPRVVRITVTDHFATDSSSDEEEALEHLPKAKRIVNEIRIRETTLSHTIGGNNNKRHEDNVNRSSLNNQRPKQDSNAHNNHKYRGVRQRPWGRWAAEIRDPLRRSRVWLGTYDTAEEAAMVYDRAAIHFRGADAVTNIIKPPPREKSIPECDETESVNCDKEEYGGGVSSSSSPTSVTVLVSRPLNEWMHMEEWFRELSGEELCLEDSLGGSCPLYEPLPLLVSNHSDIDVPFSLDKDFESCKWDVDGYFNDPLLLSTM 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi331g00004 263 Pfam AP2 domain 86 135 IPR001471 GO:0003700|GO:0006355
Sebi331g00004 263 SUPERFAMILY DNA-binding domain 86 142 IPR016177 GO:0003677
Sebi331g00004 263 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 181 - -
Sebi331g00004 263 SMART rav1_2 86 149 IPR001471 GO:0003700|GO:0006355
Sebi331g00004 263 FunFam Ethylene-responsive transcription factor 2 85 144 - -
Sebi331g00004 263 PRINTS Ethylene responsive element binding protein signature 109 125 IPR001471 GO:0003700|GO:0006355
Sebi331g00004 263 PRINTS Ethylene responsive element binding protein signature 87 98 IPR001471 GO:0003700|GO:0006355
Sebi331g00004 263 ProSiteProfiles AP2/ERF domain profile. 86 143 IPR001471 GO:0003700|GO:0006355
Sebi331g00004 263 MobiDBLite consensus disorder prediction 49 90 - -
Sebi331g00004 263 Gene3D AP2/ERF domain 85 143 IPR036955 GO:0003700|GO:0006355
Sebi331g00004 263 CDD AP2 86 141 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi331g00004 Sebi-Chr331 25716 26507 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi331g00004 7 181 AP2-EREBP Transcription Factor Family AT4G27950 45.455 2.46e-41 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi331g00004 AP2 1.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi331g00004 - - mtr:25500226 211.46