Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi330g00069 ATGGCGAGGGAGAAGATTCAGATTAAGAAGATCGACAACGCGACGGCGAGGCAGGTAACGTTCTCGAAGCGACGAAGAGGGCTTTTCAAAAAAGCGGAGGAGCTTTCTGTTCTGTGTGATGCAGATGTTGCCCTTATCATCTTCTCTTCCACTGGCAAACTCTTCGAGTACTCCAGCTCAAG 182 0.4945 MAREKIQIKKIDNATARQVTFSKRRRGLFKKAEELSVLCDADVALIIFSSTGKLFEYSSS 60
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi330g00069 60 CDD MADS_MEF2_like 2 60 IPR033896 GO:0000977|GO:0045944
Sebi330g00069 60 ProSiteProfiles MADS-box domain profile. 1 60 IPR002100 GO:0003677|GO:0046983
Sebi330g00069 60 SUPERFAMILY SRF-like 3 60 IPR036879 GO:0003677|GO:0046983
Sebi330g00069 60 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sebi330g00069 60 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sebi330g00069 60 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Sebi330g00069 60 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sebi330g00069 60 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sebi330g00069 60 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sebi330g00069 60 Gene3D - 13 60 IPR036879 GO:0003677|GO:0046983
Sebi330g00069 60 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 59 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi330g00069 Sebi-Chr330 1124065 1124246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi330g00069 1 60 MADS-box Gene Family AT2G22540 95.000 8.23e-36 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Sebi330g00069 SRF-TF 4.8e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi330g00069 - - qsa:O6P43_033235 116.316