Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi330g00044 ATGCCTCTTCTACTCACAGGCACACAACCTCGGTTACTTCTTCCCACCCCTCACAACCACAACAGAAACAGCGAACCTCTGATCACTGCTGCTGAGAAGCGCTTCCATTTCGCTTCAACGCGATTCGTTCTTTCGTCTCCCGTTTTCGCTTCCAGGCGCATTCTATTAGCCTCTCCTGTGAAGTCAGCGTCCATCAATGGGTTCTCCGTTGAGAACAATCCAGAAGCTTCCAGCGAAGTCAATGCTGCTGAGTTTTTGGACAGAATCAGAAAATGGGTTGGGTTCCTTCCTTCGATTTTTCCCGGTGGAAGCTGGTGGGACTTCTCCGACGAGGTGGAGGTTCAGGAGCTGGCTCAGCCGGTGACCGTGTGGCGCGCTTTGGCCAAAATGTGGGAACTTGTTGCTCGAGACAGATGGGTCATTTTCGCCGCATTCTCTGCTCTGATTCTCGCAGCAGTTTCGGAGATTTCCATACCACATTTCTTGACAGCATCCATCTTCTCGGCACAGGGTGCGGATATTGCAGTTTTTCATCGGAATGTGCGTTTGTTGGTTCTGTTGTGTGTAACTTCGGGAATATGCAGTGGGATACGAGGTTGCTGTTTTGGCATTGCAAATATGATTCTGGTTAAGAGAATGAGAGAAACATTATACTCTTCCCTTCTTCTTCAGGATATATCATTTTTTGACAATGAAACAGTAGGTGTTTTGACAAGTAGGCTTGGGGCAGATTGTCAACAAGTGTCAAGGGTTATTGGAAATGATCTTAACTTGATATTGCGCAACATTCTTCAGGGGGGAGGTTCATTAATTTACTTGTTGATTTTGTCTTGGCCACTTGGTTTATGTACATTGATGATATGCTCCCTATTAGCAGCAGTTATGTTACGTTATGGAAGGTACCAGAAAAAGGCAGCAAGGTTGATCCAAGAAGTCACTGCTTCTGCTAATGATGTAGCTCAAGAGACGTTGTCTCTTATTAGAACTGTCCGAGTTTATGGAACAGAAGAAGGAGAATTTGGAAGGTACAAATGGTGGCTGGGGAAATTAGCTGACATAAGCATGCGACAAAGTGCTGCATATGGGTTTTGGAATTTTAGCTTCAACACTCTCTATCATTCAGCTCAGGTTATCGCTGTGCTATTTGGAGGAATGTCTATTCTTGCGGGTCATATTACAGCAGAGAAACTTACTAAGTTTATACTCTACAGTGAATGGGTAATTTATTCAACCTGGTGGGTGGGGGACAATATATCCTCTTTGATGCAATCAGTTGGAGCTAGTGAAAAAGTATTCCACTTAATGGATCTGTCACCTAGCAGCCAATTCATAACAAGAGGAATAAAGTTGCAGAGGTTAACAGGACAAATTGAGTTTCTAAATGTATCTTTTCACTATCCTTCAAGACCAACGGTATCTGTAGTGCAACATGTAAACTTTTTTGTCAATCCTGGTGAGGTGGTTGCCATTGTTGGTCTTAGCGGTAGCGGAAAAAGCACATTGGTGAATCTTTTGCTTCGTCTCTATGAGCCTACAAATGGTCAGGTTTTGATAGATGGTATCCCTCTTAAAGACTTGGACATCATATGGTGGAGAGAGAGAATTGGATATGTGGGACAGGAACCCAAGCTATTCCGGATGGATATTAGTTCAAACATCAGATATGGATGTACCCGAGATGTAAAGCAAGAGGATGTTGAATGGGCTGCAAAGCAAGCATATGCCCATGACTTCATATCAGCACTTCCCAATGGTTATGAAACACTTGTTGATGATGATCTGTTAAGTGGGGGACAAAAGCAGCGAATTGCTATTGCTAGGGCCATTCTTAGGGACCCGAAAATATTGATCCTTGATGAAGCCACTAGTGCACTGGATGCTGAAAGTGAACATAATGTGAAGGGTGTTCTTCGATCTGTTAGAAGTGATTCTGCATCAAGGAGAAGTGTCATAGTCATCGCACACAGGCTTTCTACTATACAAGCAGCTGACAGGATTGTGGTGATGGATGGTGGTCAAGTTGTTGAGAATGGAAGTCACAGGGAACTTCTCTTAAAAGATGGTCTATATGCACGGTTGACTCGAAAACAGGCTGATGCCATGGCGGGGCGTATTCATAATCAAGATGCTGATAAGCGTCAGCTGTACTCTGCCATCCTGGTTTTAGCACATGTAATTTTCCTGTCTGCTGCAGGGAGAAACAGCAGAAATGGGGCTGCTTGCTGTTATGTGTTTCTGTGTAAAAAGAAATATAGCTTTATCTTCCCCACAAGAACAATAGAATTCGAAGAAAGGGTGTTTCATTATCCATTACAGCTGGATCAGTGGGGGGCTGGAGAATCTGGAGCGTCAGCTGCTGTCAGCCTCGGTTTCATCACCTGTGGTATATATAATGTTGAACTAGTATTTCACTTTCCTCATGCTCATTCCTTACCAACACTGTCTGCTACAGACGAGGATGAAACATTTGGATTGCACAACTTTCGGTTGCAAGCTATGCTCAAGCGTGTTGTTCATTCGTTAGGCCTAGTAGAGCACAGTGATGAAAATCCAAGAAGAAAGAACAAGGTAAGAGGATCCAAAGCATCCCCTGACTTTGGCTTGCGATCTAAGGATTCTGTTGTGAGGATAGTTCTTCAGGGTGGACAACAGGTAGTGTATCAACATGCATTCCTTGCATCTAAGTTGATGGCAAAGTATCCTGGGATGTGTATAGCCCGGCCAGATGTCTTCAGAGCTCCTCATCGGTCACTATTACGGCCAGAAGAGCATTTGCTGCTTGGTCACAAGTATATCATGATCTCATCTAAAGATGTGGAGAAGTTGAAGCGCAAACATCCAAAGAAAGACAAAACCAAAGGGCATAATGGGGTGGTGACCCCAGAGATATTGGAAGCAGAGTTTATTAAGTCTCCTAGAGGATACAAACCCAAAGTGAATGGCAAAATCAGTGTGCCAAATGGAGTAGCAAGCCTAGAGATGGTTGACACAATGATAACTCTGTCTCCCAATGAATACAAAACCCATGAGAAAAATGAAGTCAAAGAGATAAACGGGCTAGGTGAAGAAAAGATGAATCTGTCTCAAGGTGGAGGGGATGTAGAGGAATCTTATTGCTCTGCAAAGGACTTTTATGTTCTCAAGGATAAGTCGATGAGATATTCAAGAAGAAAGGGAATAAAAGGGAAGAAACCTTTTGTGCCACCTCTTCCAAAGGCAAGATCATACCGGAGTTTGGGGTGGCAACCCAGCCTTGCCACCGTGCAAGAGCTCTCTCCATGA 3282 0.4391 MPLLLTGTQPRLLLPTPHNHNRNSEPLITAAEKRFHFASTRFVLSSPVFASRRILLASPVKSASINGFSVENNPEASSEVNAAEFLDRIRKWVGFLPSIFPGGSWWDFSDEVEVQELAQPVTVWRALAKMWELVARDRWVIFAAFSALILAAVSEISIPHFLTASIFSAQGADIAVFHRNVRLLVLLCVTSGICSGIRGCCFGIANMILVKRMRETLYSSLLLQDISFFDNETVGVLTSRLGADCQQVSRVIGNDLNLILRNILQGGGSLIYLLILSWPLGLCTLMICSLLAAVMLRYGRYQKKAARLIQEVTASANDVAQETLSLIRTVRVYGTEEGEFGRYKWWLGKLADISMRQSAAYGFWNFSFNTLYHSAQVIAVLFGGMSILAGHITAEKLTKFILYSEWVIYSTWWVGDNISSLMQSVGASEKVFHLMDLSPSSQFITRGIKLQRLTGQIEFLNVSFHYPSRPTVSVVQHVNFFVNPGEVVAIVGLSGSGKSTLVNLLLRLYEPTNGQVLIDGIPLKDLDIIWWRERIGYVGQEPKLFRMDISSNIRYGCTRDVKQEDVEWAAKQAYAHDFISALPNGYETLVDDDLLSGGQKQRIAIARAILRDPKILILDEATSALDAESEHNVKGVLRSVRSDSASRRSVIVIAHRLSTIQAADRIVVMDGGQVVENGSHRELLLKDGLYARLTRKQADAMAGRIHNQDADKRQLYSAILVLAHVIFLSAAGRNSRNGAACCYVFLCKKKYSFIFPTRTIEFEERVFHYPLQLDQWGAGESGASAAVSLGFITCGIYNVELVFHFPHAHSLPTLSATDEDETFGLHNFRLQAMLKRVVHSLGLVEHSDENPRRKNKVRGSKASPDFGLRSKDSVVRIVLQGGQQVVYQHAFLASKLMAKYPGMCIARPDVFRAPHRSLLRPEEHLLLGHKYIMISSKDVEKLKRKHPKKDKTKGHNGVVTPEILEAEFIKSPRGYKPKVNGKISVPNGVASLEMVDTMITLSPNEYKTHEKNEVKEINGLGEEKMNLSQGGGDVEESYCSAKDFYVLKDKSMRYSRRKGIKGKKPFVPPLPKARSYRSLGWQPSLATVQELSP 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi330g00044 1093 Pfam PADRE domain 871 1090 IPR025322 -
Sebi330g00044 1093 ProSitePatterns ABC transporters family signature. 595 609 IPR017871 GO:0005524|GO:0016887
Sebi330g00044 1093 CDD ABC_6TM_TAP 144 431 - -
Sebi330g00044 1093 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 142 423 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi330g00044 1093 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 457 696 IPR003439 GO:0005524
Sebi330g00044 1093 Pfam ABC transporter transmembrane region 144 406 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi330g00044 1093 CDD ABC_MTABC3_MDL1_MDL2 457 697 - -
Sebi330g00044 1093 FunFam ABC transporter B family member 26, chloroplastic 123 442 - -
Sebi330g00044 1093 FunFam Multidrug ABC transporter ATP-binding protein 449 701 - -
Sebi330g00044 1093 Gene3D - 447 707 IPR027417 -
Sebi330g00044 1093 PANTHER ABC TRANSPORTER B FAMILY 135 725 IPR039421 -
Sebi330g00044 1093 SUPERFAMILY ABC transporter transmembrane region 129 437 IPR036640 GO:0005524|GO:0016020
Sebi330g00044 1093 SMART AAA_5 484 679 IPR003593 GO:0016887
Sebi330g00044 1093 Gene3D ABC transporter type 1, transmembrane domain 124 442 IPR036640 GO:0005524|GO:0016020
Sebi330g00044 1093 Pfam ABC transporter 476 623 IPR003439 GO:0005524
Sebi330g00044 1093 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 449 697 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi330g00044 Sebi-Chr330 644718 652942 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi330g00044 212 707 Calmodulin-binding Proteins AT2G36910 34.653 1.07e-68 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi330g00044 - - gmx:100775951 1144.41