Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi330g00030 ATGTCCTTTGCATTGTTTCTGCTTATCTTCCTTTCTCACCATGCACTTCCTGCTCTTGCTGACCCAAGAGCCACAGAAGCAGCAGTACTATGCACCAATAGAACTTCCCCAATGCTTCAGCGCCAAGTTTTCATAACAAATTTCTATAATGCCTTGGAAGCCTTGACCTCTCTGGTTACCACACAGAGATATGGAGCCATTATTAAAGGGACTCAAAATTCCACTGTATATATTTCTGGTGAGTGCATGAAGGACCTTTCGAAACCAGATTGCGATGTTTGCTTTGCACAGATCAAGACAAGGGTTCTGAGGTGCTCGCCATTACAGAGAGGCATTTGTGGTGGGAGGCTCTTCTTTGATGGGTGCTATCTCAGGTACGAAGATTACAATTTCTTCAATCAGAGTTTCAGTTCTCAAGACACGACTGTGTGTGGATCAAAAGATTTTAGTGGGAATAAGAGTGTTTATAAGGCTAATGTTTTAGAATTGGTTAGAAATTTGAGTGTGGAAGCACCAAAGAATGATAGGTTCTTTGTGGGGTCTGTGAGTAGAAGGAATGTAACTGTTTATGGATTGGCTCAATGCTGGAAGTTTGTGAATGGAAGTCTCTGCCAGAATTGTTTGGCTGAAGCTGTGACTAGGATTGGTTCATGTACTCAAAAACAAGAAGGGAGAGTATTGAATGCTGGATGTTACTTGAGGTATTCAACACAAAAGTTTTATAATGATAATTCAAGCAACCCTGCCCCTTTAGAAACTCAAGGATCAGGAAGTAGAAATGTTGGTATAATTGTGGCTGAATCATCTGCTGCACTGGCTACCCTGCTGATTGTTGCAACAGTTATTTTCTTTGTAAGGATGAATGTGTTGAAACGGAGGAGAGAAAGAAGACAGTTTGGTGCATTTTTGGAGACAGTGAATGAGTCCAAACTAAATACGCCATATGAAATTCTTGAAAAGGCCACAAATTACTTCAATGATTCCAATAAGCTAGGAGAAGGGGGATCAGGTTCAGTTTATAAAGGAGCTCTGCCAGATGGAACTACCGTGGCTATAAAAAGGCTTAGCTTTAACACAACACAATGGGCAGATCATTTCTTCAATGAGATACATCAGAACATGAAGCATAGGGGAAGAAAATACCTTGTTTTAAAAACAAAGGGTTATATGGCTCCAGAGTACATAGTTCTAGGGAAGTTAACTGAGAAAGCAGATGTGTACAGTTTTGGAGTTCTAGTTATTGAGATTGTATCTGGCAAAAGTTGCAGATCCGTTGTTCAAGATTCATGTTCCATCCTACACACGGTAAAGCTCTTATAA 1320 0.403 MSFALFLLIFLSHHALPALADPRATEAAVLCTNRTSPMLQRQVFITNFYNALEALTSLVTTQRYGAIIKGTQNSTVYISGECMKDLSKPDCDVCFAQIKTRVLRCSPLQRGICGGRLFFDGCYLRYEDYNFFNQSFSSQDTTVCGSKDFSGNKSVYKANVLELVRNLSVEAPKNDRFFVGSVSRRNVTVYGLAQCWKFVNGSLCQNCLAEAVTRIGSCTQKQEGRVLNAGCYLRYSTQKFYNDNSSNPAPLETQGSGSRNVGIIVAESSAALATLLIVATVIFFVRMNVLKRRRERRQFGAFLETVNESKLNTPYEILEKATNYFNDSNKLGEGGSGSVYKGALPDGTTVAIKRLSFNTTQWADHFFNEIHQNMKHRGRKYLVLKTKGYMAPEYIVLGKLTEKADVYSFGVLVIEIVSGKSCRSVVQDSCSILHTVKLL 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi330g00030 439 Gene3D Phosphorylase Kinase; domain 1 304 375 - -
Sebi330g00030 439 Pfam Salt stress response/antifungal 39 129 IPR002902 -
Sebi330g00030 439 Pfam Salt stress response/antifungal 148 237 IPR002902 -
Sebi330g00030 439 ProSitePatterns Protein kinases ATP-binding region signature. 331 353 IPR017441 GO:0005524
Sebi330g00030 439 Gene3D - 138 240 IPR038408 -
Sebi330g00030 439 Gene3D - 25 131 IPR038408 -
Sebi330g00030 439 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 384 435 - -
Sebi330g00030 439 FunFam Cysteine-rich receptor-like protein kinase 2 24 131 - -
Sebi330g00030 439 Pfam Protein tyrosine and serine/threonine kinase 389 422 IPR001245 GO:0004672|GO:0006468
Sebi330g00030 439 ProSiteProfiles Gnk2-homologous domain profile. 137 240 IPR002902 -
Sebi330g00030 439 ProSiteProfiles Gnk2-homologous domain profile. 26 131 IPR002902 -
Sebi330g00030 439 Gene3D Transferase(Phosphotransferase) domain 1 376 437 - -
Sebi330g00030 439 FunFam Cysteine-rich receptor-like protein kinase 3 140 240 - -
Sebi330g00030 439 SUPERFAMILY Protein kinase-like (PK-like) 313 422 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi330g00030 Sebi-Chr330 406742 409118 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi330g00030 17 371 Receptor kinase-like Gene Family AT1G70530 52.381 1.54e-134 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi330g00030 Stress-antifung 1.3e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi330g00030 - - gmx:100802190 566.229