Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi330g00029 ATGAAGAAAGTAGTCTCTCTCATCTCTTCTCAGTGCCTTGTGTTCCTTCTCATCAAGTTTCTATTGCTATCAGAAACTGTAATGGCAGAACCAAGAGCCAAGACAGTCCTAATAACGTGTGGCCATCAACTAGAGCACAACACCACTATCTTTGTTCCAAATTTTGTTGCAACTATGGAGAAGATCAGTGAACAGATGCGCAGTACTGGTTTTGGCACAGCAGTTACAGGGACAGGACCTGATACTAACTATGGCTTGGCCCAGTGCTATGGAGATCTTTCATTACTTGACTGTGTGCTATGTTATGCCGAGGCACGCACGGTTCTTCCCCAGTGCTTCCCTTATAATGCTGGTCGCATTTACCTTGATGGTTGCTTCATGAGGGCTGAGAACTATAGTTTCTTTAATGAGTATACAGGACCAGGAGACAGAGCTATATGTGGGAACACAACTAAGAAGAACTCAGGTTTTCAAGCAGCAGCAAAGCAGGCAGTTTTAAGAGCAGTTCAAGATGCACTCAACAACAAAGGCTATGCCCGGGGAAAGGTTGCTGTATCAGGAACAACAAACGAATCTGCTTATGTTCTGGCTGATTGTTGGAGGAATTTGGATACAAGCTCTTGCAAAGCATGTCTTGAGAATGCATCTTCTTCCATATTGGGATGCTTGCCCTTGTCAGAAGGCCGAGCACTCAACACCGGGTGCTTCATGAGGTACTCAGACACAGATTTTCTTAACAAGGAACAGGAAAATGGGAGTTCAAGAGGAAATGTAGTAGTGATTGTGGTTGCAGTAGTCAGTTCACTGATTGTTTCGGTTGTTGGAGTAACTATTGGGGTTTATATCTGGAAACAGAGATACATTCAAAAGAAAAGAAGAGGTTCAAATGATGCTGAAAAGTTAGCTAAGACTCTTCAGTACAAAAGCTTGAATTTCAAGTACTCTACACTGGAAAAGGCTACTGAATCTTTTCATGACAGTAACAAGTTAGGGCAAGGAGGATTTGGAACAGTTTATAAAGGAGTTCTAGCTGATGGAAGAGAGATTGCTATCAAGAGGTTATATTTCAACAACAGACATAGAGCAGCAGATTTCTACAATGAAGTCAACATAATTAGTGGTGTGGAACACAAAAATCTAGTCAGACTATTAGGATGCAGTTGTTCAGGACCTGAAAGCCTGCTTGTATATGAATTTCTGCCCAACAAAAGTCTTGATCGCTATCTTTTTGATAAAAACAAGGGCAGAGAACTGAACTGGGAGAAGAGATATGAAATTATCATCGGGACAGCTGAAGGATTAGCTTACCTGCATGAGAACTCCAAAATCAGGATAATTCATAGAGATATAAAAGCCAGCAACATCCTATTGGATGCAAAGCTTCGTGCTAAAATTGCAGATTTTGGTTTAGCCAGGTCCTTTCAAGACGACAGAAGCCACATAAGTACAGCTATTGCAGGAACTTTGGGGTATATGGCTCCAGAGTATCTAGCTCATGGTCAATTAACAGAAAAGGCAGACGTATATAGTTTTGGAGTGTTGCTGCTAGAGATAGTTACTGGTAGACAGAACAACAGGAGCAAAGCATCAGACTATTCAGAAAGCTTAATTACAGTGACATGGAAGCATTTTCAGTCAGGGACTGCCGAACAATTATTTGATCCAAATCTACAGCTGCATGATGACCAGAATAGCGATGTTAAGAGTGAGATTTTAAGAGTGGTTCACATAGGACTTCTATGCACCCAAGAGATCCCTACATTACGACCAACCATGTCAAAGACACTACAGATGCTAACAAAGAAGGAGGAGGATCTTGTTGCTCCCTCTAATCCACCATTCCTAGATGAGAATACCATGGAACTCCATGACATAAGCGGTGACCCATTTTACCCTCTCAATGCAGCTGATTCAATGGCTACTATGTCCCATAGCTCTTTTTATCCCAGAGTTCAGACAAGGGGAGCTGTTGAGCCAATTTTCCAACACGGTTACGGGAAGCAAAAATGTATAGTTGTATACTGTACAGTGCCATGA 2037 0.4183 MKKVVSLISSQCLVFLLIKFLLLSETVMAEPRAKTVLITCGHQLEHNTTIFVPNFVATMEKISEQMRSTGFGTAVTGTGPDTNYGLAQCYGDLSLLDCVLCYAEARTVLPQCFPYNAGRIYLDGCFMRAENYSFFNEYTGPGDRAICGNTTKKNSGFQAAAKQAVLRAVQDALNNKGYARGKVAVSGTTNESAYVLADCWRNLDTSSCKACLENASSSILGCLPLSEGRALNTGCFMRYSDTDFLNKEQENGSSRGNVVVIVVAVVSSLIVSVVGVTIGVYIWKQRYIQKKRRGSNDAEKLAKTLQYKSLNFKYSTLEKATESFHDSNKLGQGGFGTVYKGVLADGREIAIKRLYFNNRHRAADFYNEVNIISGVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDRYLFDKNKGRELNWEKRYEIIIGTAEGLAYLHENSKIRIIHRDIKASNILLDAKLRAKIADFGLARSFQDDRSHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVLLLEIVTGRQNNRSKASDYSESLITVTWKHFQSGTAEQLFDPNLQLHDDQNSDVKSEILRVVHIGLLCTQEIPTLRPTMSKTLQMLTKKEEDLVAPSNPPFLDENTMELHDISGDPFYPLNAADSMATMSHSSFYPRVQTRGAVEPIFQHGYGKQKCIVVYCTVP 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi330g00029 678 Gene3D - 33 134 IPR038408 -
Sebi330g00029 678 Gene3D - 144 244 IPR038408 -
Sebi330g00029 678 FunFam Cysteine-rich receptor-like protein kinase 2 400 607 - -
Sebi330g00029 678 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 84 622 - -
Sebi330g00029 678 FunFam Cysteine-rich receptor-like protein kinase 3 143 244 - -
Sebi330g00029 678 Pfam Salt stress response/antifungal 147 241 IPR002902 -
Sebi330g00029 678 Pfam Salt stress response/antifungal 49 132 IPR002902 -
Sebi330g00029 678 SUPERFAMILY Protein kinase-like (PK-like) 308 620 IPR011009 -
Sebi330g00029 678 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Sebi330g00029 678 ProSiteProfiles Gnk2-homologous domain profile. 33 134 IPR002902 -
Sebi330g00029 678 Pfam Protein tyrosine and serine/threonine kinase 327 595 IPR001245 GO:0004672|GO:0006468
Sebi330g00029 678 SMART serkin_6 324 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi330g00029 678 Gene3D Transferase(Phosphotransferase) domain 1 400 610 - -
Sebi330g00029 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Sebi330g00029 678 CDD STKc_IRAK 330 601 - -
Sebi330g00029 678 ProSiteProfiles Protein kinase domain profile. 324 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi330g00029 678 FunFam Putative DUF26-domain receptor-like protein kinase family protein 292 399 - -
Sebi330g00029 678 ProSiteProfiles Gnk2-homologous domain profile. 139 244 IPR002902 -
Sebi330g00029 678 Gene3D Phosphorylase Kinase; domain 1 284 399 - -
Sebi330g00029 678 FunFam Cysteine-rich receptor-like protein kinase 2 33 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi330g00029 Sebi-Chr330 398315 401471 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi330g00029 17 650 Receptor kinase-like Gene Family AT1G70520 68.966 0.0 870
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Sebi330g00029 PK_Tyr_Ser-Thr 9.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi330g00029 - - gmx:100804094 1141.33