Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi330g00026 ATGGTCAAATCCTTGTCGGATTGGGTGGGTGTCAGAAGCAATTTGTGCTTTGTGGGTGCTCGTGATGATGGGGGTGTATCTTCGGACGAAGATTTTAGTGCTGGAGATGGTGATGGGCAAGATGGACAATTAAAAGGAGAAGATCGTGAGCTCAAGGACAGGCTTTTACGCAAGTTTGGGAGTCACATTGGAACATTGAAATTGGAATTTTCGAAGAAGAAAAAGAAGGGTAAGCTTCCGAAGGAAGCAAGACAAACACTGCTTCAGTGGTGGAATGTTCACTACAAATGGCCTTACCCAACGGAAGCTGATAAGATTGAACTGGCTAAGTCAACAGGGCTAGACCAGAAGCAAATTAACAATTGGTTTATTAATCAAAGAAAACGTCATTGGAAACCATCTGAGAATATGCAGTTTTCTATGATGGAAAATCTGACCGGACGATTCCTTGCCGAAGAATGA 462 0.4286 MVKSLSDWVGVRSNLCFVGARDDGGVSSDEDFSAGDGDGQDGQLKGEDRELKDRLLRKFGSHIGTLKLEFSKKKKKGKLPKEARQTLLQWWNVHYKWPYPTEADKIELAKSTGLDQKQINNWFINQRKRHWKPSENMQFSMMENLTGRFLAEE 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi330g00026 153 Pfam Homeobox KN domain 90 129 IPR008422 GO:0003677|GO:0006355
Sebi330g00026 153 SUPERFAMILY Homeodomain-like 71 142 IPR009057 -
Sebi330g00026 153 CDD homeodomain 82 134 IPR001356 GO:0003677
Sebi330g00026 153 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 45 141 - -
Sebi330g00026 153 MobiDBLite consensus disorder prediction 27 47 - -
Sebi330g00026 153 ProSiteProfiles ELK domain profile. 50 70 IPR005539 GO:0003677
Sebi330g00026 153 ProSitePatterns 'Homeobox' domain signature. 108 131 IPR017970 GO:0000981|GO:0006355
Sebi330g00026 153 SMART ELK_2 50 71 IPR005539 GO:0003677
Sebi330g00026 153 ProSiteProfiles 'Homeobox' domain profile. 70 133 IPR001356 GO:0003677
Sebi330g00026 153 Gene3D - 69 143 - -
Sebi330g00026 153 FunFam Homeobox protein knotted-1-like 2 75 137 - -
Sebi330g00026 153 SMART HOX_1 72 137 IPR001356 GO:0003677
Sebi330g00026 153 Pfam ELK domain 50 71 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi330g00026 Sebi-Chr330 388411 389440 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi330g00026 19 153 Homeobox Transcription Factor Family AT1G23380 72.794 4.69e-65 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Sebi330g00026 Homeobox_KN 1.2e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi330g00026 - - gmx:100794719 244.973