Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi330g00018 ATGTCAACACTGAACCATCTTTTTGATCTTCCAGAACAGATATGTTACGTACAATGTGGATTCTGTAACACCATTTTAATGGTGAGTGTCCCATGCAGCAGTTTGTCAATGGTGGTGACAGTTAGATGCGGCCACTGCACAAGCCTCCTCTCTGTTAATATGATGAAAGCTTCTTTTGTCCCTTTCCACCTTTTAGCATCTCTTAGTCATCTTGAGCCAAAAGAAAGTAGTCCAGAAGAAGATGCAAACAAGACTTTGAACAGTCATAGTGCATCCATGATGACCTATTCTGATTGTGAGGAAGAGGATGTAATTCCAATGAACAATGTTGTGAATAAACCCCCAGAGAAGAGACAGCGAACACCATCAGCATATAACCGCTTCATCAAAGAAGAGATTAAAAGGCTAAAGGCTGAAAACCCTGACATGGCTCACAAGGAAGCTTTCAGCACAGCTGCAAAAAATTGGGCCAATTTCCCCCCAACTCAGTACAAAGGAGATGAAGATAACTGTAGCCAGACAGATCAACCTGTGGATCTGGACTCCCATGTGGACCCTCAAGATGCAGAGGTCAATGAAGAAGGTCAGGGTTTCCGTGGAAGAAAGGTCCCAAGGAATTCCATCTTGGAAAGGACACCATTTGAGTGA 648 0.4336 MSTLNHLFDLPEQICYVQCGFCNTILMVSVPCSSLSMVVTVRCGHCTSLLSVNMMKASFVPFHLLASLSHLEPKESSPEEDANKTLNSHSASMMTYSDCEEEDVIPMNNVVNKPPEKRQRTPSAYNRFIKEEIKRLKAENPDMAHKEAFSTAAKNWANFPPTQYKGDEDNCSQTDQPVDLDSHVDPQDAEVNEEGQGFRGRKVPRNSILERTPFE 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi330g00018 215 PANTHER PROTEIN YABBY 6-RELATED 2 175 IPR006780 GO:0007275
Sebi330g00018 215 MobiDBLite consensus disorder prediction 181 208 - -
Sebi330g00018 215 MobiDBLite consensus disorder prediction 159 215 - -
Sebi330g00018 215 FunFam Axial regulator YABBY 4 107 174 - -
Sebi330g00018 215 SUPERFAMILY HMG-box 109 163 IPR036910 -
Sebi330g00018 215 Gene3D High mobility group box domain 108 171 IPR036910 -
Sebi330g00018 215 CDD HMG-box_SF 120 163 - -
Sebi330g00018 215 Pfam YABBY protein 11 164 IPR006780 GO:0007275
Sebi330g00018 215 MobiDBLite consensus disorder prediction 165 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi330g00018 Sebi-Chr330 219910 221719 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi330g00018 2 215 C2C2-YABBY Transcription Factor Family AT1G23420 59.211 3.20e-74 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Sebi330g00018 YABBY 1.3e-64 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi330g00018 K25796 - gmx:100804172 389.423