Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi32g00047 ATGCCTCTCGTCCCTGTCCTCCCGGTTGTGCCATCAACCACTTCATCTCCGTCCTTTGCTTTGGTTTTGCATTCGGTGGGTGGGCTTGTTTTTAGAGTGAAGGGAGTTCCAGGGTCTACCATTGTTCCGCGCCTAAGGTTATCAAGCTGGGGTGGTAAGCAGGGTGTTGGTGGGTTGTTTGTCGAGGATGAAGCAGGTGGTGTATATGTAGTTGATGAAAACTGGGTTGATAAATTTTTTGTTGATGATGAAGGTCAAAACGGTAGTGGTTTTGTTGATGATGAAAATGTTGAGTATGGTCGTTCAGCATACAAAGACATGCCTACCTTTGAAGATGAAGACGGTGGTGTTTTCTTTGTTGAAGATGATGGGGAAGATAGTAATGCTGGTGATGGTAGTAGTCCTGAATTTGATGGGGAAATAAAATTAATTGACAGTGAAGATGATATTCTAAATTTGGGGGACCTAAATATGTTGAGTCCTCATGAAATACAAAATTGGGAATTTGCTAATATGGATGTGGCATTCAAGTTCTATTTTGAGTATGCAAAAGCAAATGGTTTCAGTATACGTAGGGGCAGAACGTTGAGGAATAAGAAGACCTTGGAGGAGTATCAGAAAGAATTTTGGTGCTCCAGAGCAGGTACACGTGAAGATAGGGGCCTAAGAATGGAAGATAGAGTTCGTGAGCCTAGACCTATCACGAGATGGTCAGTGCATTGTAGTATGCTTCCGGCCTATAGAAGAATGGTTGACAGCGATGTTGTGCAGATGAATAACATGATGAAGGTTGGTATAAGGCCACCTAATATATTCAGTACATTTGCTAGCCAGTCAGGAGGGTATGAAAAGATTGGGTTTAGGAAGAAAAACATGTATAACAAGATCAATGAGCAGCGGCGGAAGGGGAAGTTCTTTGGTGGATTCAGAACAACATCTAGGTGTGAAGGATTGCATTCAGAGTTAGAAAAGTTTGTACATTCCAGGTACAATTTGGGTGACTTTTTACAGCATTTTCATCGTTGCCTGAGTCATATGCGTTTCAGAGAGAAGGAAGATGATTTCACATCAATTCACGGGGACCCCATAATGCAAACTCAGATGCAATCACTTGAAAGTTTTGTTGCCCGAGTGTACACAAGGAGAGATTTTTTCTTGTTCCGGAGGGTGCTGCACAGGGCGTCAATGTTGGTAATTAATGGATATACACAAGTTGTTCGATGCACTATATTTAAAGTGAGAGGCAATTCTGATAACTCTGTTGAATGTAGTGTTTTGTTGTATCCGTCTAGTAAAGAATTTAAATGTGGGTGTCTGAAAATGGAATCAATAGGGTTACCGTGTGAGCATATTTTTGTTGTTTTGGGATTTTTAGGGATTCATGAAATACCAGATTCGTTGGTCCTGAAACGGTGGTCCAAGGGTGCTAAGGATGGTATATGTCTAGGAGTAGGTGAAAACAATGAACCTTGGGATGCTGGAAGGAGTGCTAGGAGGGCTGCACTAAATGGTTTGTACAATGATGTTAGTGCTTTTAAGGCTGCTACTATTGAAAAGTTCAATTTAGAACGCGAAAGGATACTTGCTGACCTAAGAGAATGCAGGGCTGAGAAAGCAGCGGAACAGGAAAGATGTGGTCCTTCTTCTAATGTTGCAAATGACACTGTGAGGAACCTGTGCGTGTATCTACGAAGGGAAGTGGTGTTGCATCATCTTCCTCCGGCTTAA 1728 0.4207 MPLVPVLPVVPSTTSSPSFALVLHSVGGLVFRVKGVPGSTIVPRLRLSSWGGKQGVGGLFVEDEAGGVYVVDENWVDKFFVDDEGQNGSGFVDDENVEYGRSAYKDMPTFEDEDGGVFFVEDDGEDSNAGDGSSPEFDGEIKLIDSEDDILNLGDLNMLSPHEIQNWEFANMDVAFKFYFEYAKANGFSIRRGRTLRNKKTLEEYQKEFWCSRAGTREDRGLRMEDRVREPRPITRWSVHCSMLPAYRRMVDSDVVQMNNMMKVGIRPPNIFSTFASQSGGYEKIGFRKKNMYNKINEQRRKGKFFGGFRTTSRCEGLHSELEKFVHSRYNLGDFLQHFHRCLSHMRFREKEDDFTSIHGDPIMQTQMQSLESFVARVYTRRDFFLFRRVLHRASMLVINGYTQVVRCTIFKVRGNSDNSVECSVLLYPSSKEFKCGCLKMESIGLPCEHIFVVLGFLGIHEIPDSLVLKRWSKGAKDGICLGVGENNEPWDAGRSARRAALNGLYNDVSAFKAATIEKFNLERERILADLRECRAEKAAEQERCGPSSNVANDTVRNLCVYLRREVVLHHLPPA 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi32g00047 575 Pfam FAR1 DNA-binding domain 177 243 IPR004330 -
Sebi32g00047 575 PANTHER OS01G0519700 PROTEIN 329 508 - -
Sebi32g00047 575 Coils Coil 517 544 - -
Sebi32g00047 575 ProSiteProfiles Zinc finger SWIM-type profile. 421 459 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi32g00047 Sebi-Chr32 1325152 1328162 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi32g00047 FAR1 9.5e-09 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi32g00047 - - tpra:123913749 224.557