Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi32g00034 ATGGGTGCTCTGCAATCTACACTTATCTACCTGATTATATTACAGGCATGCAAGCTTTCTGTTTGCTGGGAGGAAGAATGGAAGTCTGCCACTGCAACATACGTCAAAGATACAGAGGGATCACTCATTACAGAAGGAGCTTGTGGTTATGGAGATCTCCACAAGGTCGACTATGGGAAATATAGTACTGGGTTAAGCACCTTCTTGTTCAACAGAGGGAGTACTTGTGGGGCTTGCTATGAGATCAGATGCGTTGACCACATCTTATGGTGCTTGCAGGGAAGCCCCTCTGTAGTTGTCACTGCTACAGATTTCTGTGCTCCAAATTATGGACTCGCAGCTGATTATGGTGGCTGGTGCAATTTTCCAAAAGAACATTTTGAGATGTCTGAAGCTGCATTCGCTGAAATATTCAAGAGAAAAGCTGATATAGTGCCAGTTCAATATAGAAGAGTAAAATGTCAAAGAAGTGGTGGCCTGAAATTCACAATGAGTGGAAGTTATCACTTCTATCAAGTTCTGATTACCAATGTAGGGTTGGATGGTGAAGTGGTTGCTGTGAAAGTGAAGGGAGTTATAACAGGATGGATACCCATGGCAAGGAATTGGGGCCAAAACTGGCATTGCAATGTGAACCTCCAACGACAGCCTCTGTCCTTTGAGGTGACTATCAGCAGCGGAAAAAACAGTCACATCTTACAATGTAGCCCCTGCAAACTGGCAATTTGGACAGACATTTGA 741 0.4386 MGALQSTLIYLIILQACKLSVCWEEEWKSATATYVKDTEGSLITEGACGYGDLHKVDYGKYSTGLSTFLFNRGSTCGACYEIRCVDHILWCLQGSPSVVVTATDFCAPNYGLAADYGGWCNFPKEHFEMSEAAFAEIFKRKADIVPVQYRRVKCQRSGGLKFTMSGSYHFYQVLITNVGLDGEVVAVKVKGVITGWIPMARNWGQNWHCNVNLQRQPLSFEVTISSGKNSHILQCSPCKLAIWTDI 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi32g00034 246 PANTHER EXPANSIN-A15 15 234 IPR002963 GO:0009664
Sebi32g00034 246 PRINTS Expansin signature 57 71 IPR002963 GO:0009664
Sebi32g00034 246 PRINTS Expansin signature 98 108 IPR002963 GO:0009664
Sebi32g00034 246 PRINTS Expansin signature 134 147 IPR002963 GO:0009664
Sebi32g00034 246 PRINTS Expansin signature 117 134 IPR002963 GO:0009664
Sebi32g00034 246 PRINTS Expansin signature 205 226 IPR002963 GO:0009664
Sebi32g00034 246 PRINTS Expansin signature 170 191 IPR002963 GO:0009664
Sebi32g00034 246 PRINTS Expansin signature 158 170 IPR002963 GO:0009664
Sebi32g00034 246 PRINTS Expansin signature 84 95 IPR002963 GO:0009664
Sebi32g00034 246 Gene3D - 159 240 IPR036749 -
Sebi32g00034 246 Pfam Expansin C-terminal domain 161 228 IPR007117 -
Sebi32g00034 246 Gene3D - 13 155 IPR036908 -
Sebi32g00034 246 CDD DPBB_EXPA_N 26 154 - -
Sebi32g00034 246 SUPERFAMILY PHL pollen allergen 156 237 IPR036749 -
Sebi32g00034 246 PRINTS Expansin/Lol pI family signature 26 41 IPR007118 GO:0005576
Sebi32g00034 246 PRINTS Expansin/Lol pI family signature 44 62 IPR007118 GO:0005576
Sebi32g00034 246 PRINTS Expansin/Lol pI family signature 66 84 IPR007118 GO:0005576
Sebi32g00034 246 PRINTS Expansin/Lol pI family signature 196 210 IPR007118 GO:0005576
Sebi32g00034 246 PRINTS Expansin/Lol pI family signature 142 158 IPR007118 GO:0005576
Sebi32g00034 246 SUPERFAMILY Barwin-like endoglucanases 26 177 IPR036908 -
Sebi32g00034 246 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 45 159 IPR007112 -
Sebi32g00034 246 Pfam Lytic transglycolase 64 149 IPR009009 -
Sebi32g00034 246 SMART dpbb_1 62 149 IPR007112 -
Sebi32g00034 246 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 169 228 IPR007117 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi32g00034 Sebi-Chr32 948206 949141 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi32g00034 2 237 Expansin Gene Family AT4G38210 61.925 4.58e-106 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi32g00034 - - qsa:O6P43_000704 408.297