Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi32g00027 ATGTCTCGCAGAATAATATCATTATCTGAGATTGTGAGTGGTAGAGTAGATTGGAAAATTAGGGTGAAAGTAATCAGATTATGGAACGAAACAGATTTTGAAGATCCAAGTATTAAAAATAGTATTGAGATGGTTTTTCTTGATGAAAAGGGTACTCGGATGCACTGTATTATTAAAAAAGCTTTAATGGCTACTTTTGAGAATGAATTCAAAGAATGGTCGTGTTATCTTATCCAGAATATTATGGTTGCTCATAATGAGGGAAGATTTAAGACTACTTCTCATAAGTTCAAATTGAGTTTTATGGCAAATACAAGGGTTCAGCAGATAAATTATGAAAGTTTTCCTAAAAATGCTTATCAATTTGTTCCTTTCGATCAGATTAATGATGGGCGTCCTACCAACTTATTAATAGATGTTATAGGTCATATTATGCAGAAAGATGAGATTAAAGTGAATTCAAAGAATAACAACACAACAAAGCGCATAGAATTGGTTTTGGAAGATTTAGAGAAAAATCAGATGAGTTGTACTTTGTGGAATCACTATGCTGAAGATTTGGAAGAGTATATGAGTAAACAACCTGTAAATGGCAGTGTTGTTATTGTCATTCTGCAGTTTTGTATGATAAGGATTTTCAATGGAAATGTTGGAATCTGCTCTTATTATGAAACAACGAAAATGTTGTTGAATGATGACACAAAAGAAGTTCAGGCTTATCGATCACATAACATTTCTGTGATTGATGATATGCTACAAACACAAAGGATGACAATTGCTGAAATTGTTGAATGTTCTGAGAAATTTCAAACTTCTGTGATGGCTAAGGTCATTGAAATTGATTTTGCAAGAGGATGGTTCTATGAATCATGTACTCATTGCTTCAAAAAGGTGCAAGATATTGGAGGAAAATGGTTATGTGAAGGCAAAAATTGTATGCGGATTGTGATTCCTGTTCGAAGGTACATGATCAATTTGAATGTCATTAATGCATCTGGTTCCACCAACTTTGTCATGTTTGATAGAGTGGCTGTGAAACACTTTGGGAAGTCAGTTACAGATTTCACTAAGTTGAATCAGGTTGGGTTAGATGATGAATTGCCTCATGATATTGATCTGTATGGACATTTGGAGATGAAGGATTTGAGCCAAATTTCTGTTGGAGAAACCCCTACTAGCAAGGAAGTTGGAAAAAGACTACGTGAAAATGTAGAAGTCATTTCAATAGTTGAGGATGTTGGGACTCAATCATCTAGCAGCAAATTACCAAAGTTGGCTGATTTTCAACAGGTTGACTTCAAGTTGAAGGAAGTGAAGAAGGAAAAAATGAATTGA 1335 0.3423 MSRRIISLSEIVSGRVDWKIRVKVIRLWNETDFEDPSIKNSIEMVFLDEKGTRMHCIIKKALMATFENEFKEWSCYLIQNIMVAHNEGRFKTTSHKFKLSFMANTRVQQINYESFPKNAYQFVPFDQINDGRPTNLLIDVIGHIMQKDEIKVNSKNNNTTKRIELVLEDLEKNQMSCTLWNHYAEDLEEYMSKQPVNGSVVIVILQFCMIRIFNGNVGICSYYETTKMLLNDDTKEVQAYRSHNISVIDDMLQTQRMTIAEIVECSEKFQTSVMAKVIEIDFARGWFYESCTHCFKKVQDIGGKWLCEGKNCMRIVIPVRRYMINLNVINASGSTNFVMFDRVAVKHFGKSVTDFTKLNQVGLDDELPHDIDLYGHLEMKDLSQISVGETPTSKEVGKRLRENVEVISIVEDVGTQSSSSKLPKLADFQQVDFKLKEVKKEKMN 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi32g00027 444 CDD RPA1_DBD_B_like 139 242 - -
Sebi32g00027 444 Pfam Domain of unknown function DUF223 43 129 IPR003871 -
Sebi32g00027 444 CDD RPA1_DBD_C 272 371 IPR047192 -
Sebi32g00027 444 CDD RPA1_DBD_A_like 19 107 - -
Sebi32g00027 444 Pfam Replication factor-A C terminal domain 273 364 IPR013955 -
Sebi32g00027 444 Gene3D - 114 247 IPR012340 -
Sebi32g00027 444 Gene3D - 248 382 IPR012340 -
Sebi32g00027 444 Gene3D - 2 109 IPR012340 -
Sebi32g00027 444 PANTHER OS03G0429900 PROTEIN 6 430 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi32g00027 444 SUPERFAMILY Nucleic acid-binding proteins 254 360 IPR012340 -
Sebi32g00027 444 Pfam Replication protein A OB domain 134 214 IPR031657 -
Sebi32g00027 444 SUPERFAMILY Nucleic acid-binding proteins 5 109 IPR012340 -
Sebi32g00027 444 SUPERFAMILY Nucleic acid-binding proteins 120 242 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi32g00027 Sebi-Chr32 572350 574945 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi32g00027 1 358 Core DNA Replication Machinery Family AT5G08020 22.194 9.04e-11 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi32g00027 - - mtr:112422829 250.366