Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi329g00005 ATGGGAAGACAACCTTGCTGTGATAAGGTTGGTTTGAAGAGAGGTCCATGGACTATTGAGGAAGATCACAAGCTCATGAACTTCATCCTCAACAATGGCATACATTGCTGGAGAATGGTTCCCAAACTTGCAGGTCTTCTAAGATGTGGAAAAAGCTGCAGATTGAGATGGATTAATTATCTGAGGCCAGACCTTAAGAGAGGTGGCTTCACTGAAATGGAAGAGGATCAAATTATACAATTACATGCACGTCTTGGTAACAGGTGGTCTAAGATTGCTTCACATTTTCCTGGGAGGACAGACAATGAAATCAAGAACCATTGGAACACAAGAATCAAGAAGAGGCTGAAGCTCCTTGGTGTGGACCCTGTGACCCACAAACCAATTGAGCAAAAGGAACACACTGATGAGGATGAAAAAAGTAAGACCAACCTACTAGAGCCAAATATTTCTATAGGCTCTGAAGAAAATGTGGAGATTAAATCCTTGGACAGTGATGGCACCAAGGAAATTGTGACAAAAACAGAAGGGAAAAGAGAAGAGAACAATGTCAGTTGGGATGATACCACTGAACTTCTAAACAATTTTGAAATGCTATGCTCACAATTGGACTTGGAATCATGGATGAGCCAAGAAACAAACACTGCTAGTACTAATTCATTTTGTAGTTCTTCTGTCTCTCTTGATGATACTAGCCACCTTTCAATGGGTGAATCCCCTTACCTTCAGGAAAATTCCTTACAGCAATGGGTTGATAGTATGGATTCAAATCTCTCATGGGATGGCTTCAATCCTTTTGACCAAGACATTTTCTTCCAGGAAAATAGGGAATAA 834 0.4065 MGRQPCCDKVGLKRGPWTIEEDHKLMNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYLRPDLKRGGFTEMEEDQIIQLHARLGNRWSKIASHFPGRTDNEIKNHWNTRIKKRLKLLGVDPVTHKPIEQKEHTDEDEKSKTNLLEPNISIGSEENVEIKSLDSDGTKEIVTKTEGKREENNVSWDDTTELLNNFEMLCSQLDLESWMSQETNTASTNSFCSSSVSLDDTSHLSMGESPYLQENSLQQWVDSMDSNLSWDGFNPFDQDIFFQENRE 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi329g00005 277 FunFam MYB transcription factor 68 129 - -
Sebi329g00005 277 SMART sant 13 63 IPR001005 -
Sebi329g00005 277 SMART sant 66 114 IPR001005 -
Sebi329g00005 277 CDD SANT 16 61 IPR001005 -
Sebi329g00005 277 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sebi329g00005 277 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Sebi329g00005 277 Gene3D - 11 67 - -
Sebi329g00005 277 Gene3D - 69 147 - -
Sebi329g00005 277 CDD SANT 70 110 IPR001005 -
Sebi329g00005 277 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sebi329g00005 277 FunFam MYB transcription factor 11 67 - -
Sebi329g00005 277 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 208 - -
Sebi329g00005 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Sebi329g00005 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Sebi329g00005 277 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Sebi329g00005 277 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi329g00005 Sebi-Chr329 455084 456312 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi329g00005 1 146 MYB Transcription Factor Family AT5G16600 71.918 9.60e-78 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi329g00005 Myb_DNA-binding 5.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi329g00005 K09422 - gmx:100783231 484.182