Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi328g00044 ATGGGTGCTCCTAAGCAGAAATGGACTGCAGAAGAAGAGGCAGCACTGAAAGCTGGAGTAGTCAAACATGGGGCAGGAAAATGGCGCACTATACTTACAGATCCTGAGTTCAGTGCTATTTTGCGGATGCGATCAAATGTAGATCTCAAGGATAAATGGAGGAATATAAATGTGACAGCAATATGGGGATCCCGGCAGAAGGCAAAGCTTGCCCTTAAAAGGAACCTTCCAGCCCCCAAAGTTGACAATAACCATTTGGCCTTGAGTACAGTAGTTCGACGTGAAGAAGTTCACGATACTAAGCCCTTAGCAATTACTGGTGGAACATTGCAATCTCCCAATTCAAAAGAACAAATATCAAGGTTCAAGAGGTTCCAGTTGGGGGATAATCATATATTAGAGGCTGTTGTTAGTATGAAGGAGCCAAAAGGTTCTGACAGGGCTGCCATTGCTTCTTACATAGAGGAAAAATATCGGTGTCCACCAAACCTCAGAAAGTTACTATCAGCAAAACTGAAGCATATGGTGGAAAGTGGCAAAATAATCAAGGAAAAGCATAAGTACAGAATTACACCAAGTTCAACAGTCACTGAGAAAAGAAGATGCTCTTCCTTGATACATGTGGAAGGGAGGCCCAAAGATTCTCCAGAAGCAGAGAAGAGTGATGATGTTAACATCCTTTCAAAATCCCAAATTGATGCTGAGCTATCAAAAGCGAAGGGCATGACAGCTCAAGAAGCAGCTGCTGCAGCTGCAAAAGCAGTTGCAGAGGCAGAAGTTGCCATTGCACAGGCTGAGGCAGCAGCTAGGGAGGCAGAGGCTGCAGAAGCTGAAGCAGAGGCTGCTCAAGTGTTTGCAAAAGCAGCAGTGAAGGCGCTAAAATGCAAAATGCTTCATATTTGGTAG 906 0.4448 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKRNLPAPKVDNNHLALSTVVRREEVHDTKPLAITGGTLQSPNSKEQISRFKRFQLGDNHILEAVVSMKEPKGSDRAAIASYIEEKYRCPPNLRKLLSAKLKHMVESGKIIKEKHKYRITPSSTVTEKRRCSSLIHVEGRPKDSPEAEKSDDVNILSKSQIDAELSKAKGMTAQEAAAAAAKAVAEAEVAIAQAEAAAREAEAAEAEAEAAQVFAKAAVKALKCKMLHIW 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi328g00044 301 FunFam Telomere repeat-binding factor 1 2 58 - -
Sebi328g00044 301 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 120 192 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sebi328g00044 301 Gene3D - 2 59 - -
Sebi328g00044 301 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Sebi328g00044 301 SMART h15plus2 128 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sebi328g00044 301 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Sebi328g00044 301 CDD SANT_TRF 6 57 - -
Sebi328g00044 301 Gene3D - 129 201 IPR036388 -
Sebi328g00044 301 PANTHER SINGLE MYB HISTONE 4 1 296 IPR044597 GO:0003691
Sebi328g00044 301 Pfam linker histone H1 and H5 family 132 185 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sebi328g00044 301 Coils Coil 248 285 - -
Sebi328g00044 301 SUPERFAMILY "Winged helix" DNA-binding domain 130 201 IPR036390 -
Sebi328g00044 301 CDD H15 132 187 IPR005818 GO:0000786|GO:0003677|GO:0006334
Sebi328g00044 301 SMART sant 4 59 IPR001005 -
Sebi328g00044 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Sebi328g00044 301 SUPERFAMILY Homeodomain-like 2 68 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi328g00044 Sebi-Chr328 1017233 1020335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi328g00044 1 301 Single Myb Histone (SMH) Gene Family AT5G67580 53.443 6.22e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Sebi328g00044 Linker_histone 2.8e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi328g00044 K09422 - gmx:100779583 419.083