Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi328g00007 ATGGGTCTTGATCAGGATGGTAGTAACTCAGGCCTTCAGCTTATTCTAGGATTAGCTTTGACTCTCACACCGCAAGATACCCACAAGGTGGATGATGTTAGGCCAAGCCCAACGCCAAGGAAGGCTTATTATGAGGCTGAGCCATCGTTAACGTTGGGTCTGTCCGGTGAGAGTTATCCTCATGCGCAGCAAGTGGTCAAAAATAATAAGATGGATATAATAGAGCACAGTAATAATAAAGTTTATTACTGTAGTGAGGACCCTCTTGATCATTTGTCTACACAGACTTCACCTCACACTCACAGCGCTGTTTCCTCCTCCTTCTCCAGTGGCAGGGTCAAGAGGGAGAGGGATCTTAGCAGTGAAGAAATTGAGGCAACAGAGTTAGAGAGGGTTTCTTCACGAGCCAGCGATGAAGATGAAGAAGGAACCACTACCAGGAAGAAACTCAGGCTTACCAAAGAACAATCTGCTATGCTTGAGGAAAGCTTCAAACAACACAGCACTCTCAATCCTAAACAGAAGCAGGCTTTAGCGAAGCAGTTAAATCTACGGCCTCGACAAGTTGAGGTGTGGTTCCAGAACCGGAGAGCCAGAACAAAGCTGAAGCAGACGGAGGTGGACTGCGAGTTCCTAAAGAAATGCTGTGAAACGTTGACAGATGAGAATAGGAGGCTACAGAAGGAGCTGCAAGAGTTGAAGGCACTGAAACTCTCACAGCCTTTGTATATGCCTATGCCTGCGGCAACTCTCACCATGTGCCCTTCTTGTGAGAGGCTTGGTGGTGTCAACGGTGGTGCTTCTAATAAAACTCCATTCTCCATCGCTCCCAAGCCTCACTTCTTCAACCCCTTCACCAATCCTTCTGCAGCATGTTGA 879 0.4733 MGLDQDGSNSGLQLILGLALTLTPQDTHKVDDVRPSPTPRKAYYEAEPSLTLGLSGESYPHAQQVVKNNKMDIIEHSNNKVYYCSEDPLDHLSTQTSPHTHSAVSSSFSSGRVKRERDLSSEEIEATELERVSSRASDEDEEGTTTRKKLRLTKEQSAMLEESFKQHSTLNPKQKQALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELKALKLSQPLYMPMPAATLTMCPSCERLGGVNGGASNKTPFSIAPKPHFFNPFTNPSAAC 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi328g00007 292 SMART HOX_1 145 207 IPR001356 GO:0003677
Sebi328g00007 292 Pfam Homeodomain 147 201 IPR001356 GO:0003677
Sebi328g00007 292 Gene3D - 151 201 - -
Sebi328g00007 292 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 47 268 - -
Sebi328g00007 292 MobiDBLite consensus disorder prediction 111 150 - -
Sebi328g00007 292 FunFam Homeobox-leucine zipper protein 18 131 208 - -
Sebi328g00007 292 SUPERFAMILY Homeodomain-like 136 204 IPR009057 -
Sebi328g00007 292 ProSiteProfiles 'Homeobox' domain profile. 143 203 IPR001356 GO:0003677
Sebi328g00007 292 ProSitePatterns 'Homeobox' domain signature. 178 201 IPR017970 GO:0000981|GO:0006355
Sebi328g00007 292 MobiDBLite consensus disorder prediction 93 150 - -
Sebi328g00007 292 Pfam Homeobox associated leucine zipper 203 237 IPR003106 GO:0006355|GO:0043565
Sebi328g00007 292 Coils Coil 209 239 - -
Sebi328g00007 292 SMART halz 203 246 IPR003106 GO:0006355|GO:0043565
Sebi328g00007 292 MobiDBLite consensus disorder prediction 93 110 - -
Sebi328g00007 292 CDD homeodomain 147 204 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi328g00007 Sebi-Chr328 148032 149322 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi328g00007 1 292 Homeobox Transcription Factor Family AT4G37790 59.283 6.89e-99 290
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi328g00007 Homeodomain 8.2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi328g00007 K09338 - gmx:100784129 378.252