Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi327g00056 ATGGCAAGCCCGACAGGTGTTGGATCTAAGACTAGAGTTGGTAGGAATGTGGGAAAATCCAAAGGAGGAAAAGACAAAGGTGTCAAAGGTGAAGGTTCAAGCTTTTGGATGAAACTCTGGATGTTGTTCGCTTGCATGGCTTGGGGGTCCAAAGCGGAACATTGCTCCTCAGGTGACACTGGCAGCAACAACAAACAGGATAAGGGAAAGAAACCTATAAGAGATATTTCCAAAGCCCCAGTGGTTGCTGAAGCATCCTCAAGCAACAATAACAATCAAGAAACAAGCGGATCTACTCCCCACCTGATCATGGAACTGCAACAATATTCCCATCTTAGGCAATTCACCTTTCATGAGCTCAAGTTGGCAACTAAGAATTTCAAAGCTGGGAATTTTCTTGGTGAGGGAGGCTTTGGTACTGTACATAAAGGATGGATCACTCAGAACGGTTGCTCCCCATCACGACCTGGAGTGGGGATTCCAGTTGCAGTGAAGACACTCAACATAGAAGGAAATCAGGGTCATAAAGAATGGGTGGCTGAAGTGAGCAATCTAGGTGCCATGGAACACCCCAACCTTGTTAAATTGGTTGGATACTGCATAGAAGGAGATAACAGGGTTTTGGTGTATGAGTTTATGCCTAGAGGAAGTTTAGAACATCATCTCTTTAGGAGTACGTAA 681 0.4479 MASPTGVGSKTRVGRNVGKSKGGKDKGVKGEGSSFWMKLWMLFACMAWGSKAEHCSSGDTGSNNKQDKGKKPIRDISKAPVVAEASSSNNNNQETSGSTPHLIMELQQYSHLRQFTFHELKLATKNFKAGNFLGEGGFGTVHKGWITQNGCSPSRPGVGIPVAVKTLNIEGNQGHKEWVAEVSNLGAMEHPNLVKLVGYCIEGDNRVLVYEFMPRGSLEHHLFRST 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi327g00056 226 Pfam Protein tyrosine and serine/threonine kinase 129 224 IPR001245 GO:0004672|GO:0006468
Sebi327g00056 226 PANTHER OS01G0588500 PROTEIN-RELATED 88 224 - -
Sebi327g00056 226 MobiDBLite consensus disorder prediction 1 29 - -
Sebi327g00056 226 ProSiteProfiles Protein kinase domain profile. 127 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi327g00056 226 FunFam Serine/threonine-protein kinase BIK1 93 212 - -
Sebi327g00056 226 ProSitePatterns Protein kinases ATP-binding region signature. 133 165 IPR017441 GO:0005524
Sebi327g00056 226 Gene3D Phosphorylase Kinase; domain 1 102 212 - -
Sebi327g00056 226 MobiDBLite consensus disorder prediction 55 74 - -
Sebi327g00056 226 SUPERFAMILY Protein kinase-like (PK-like) 96 225 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi327g00056 Sebi-Chr327 1042114 1043126 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi327g00056 89 226 Glycoside Hydrolase AT3G07070 43.478 1.46e-28 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Sebi327g00056 PK_Tyr_Ser-Thr 3.5e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi327g00056 - - tcc:18601446 207.608