Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi327g00052 ATGGAAAGCCCTGTTGGTGTTGGTGCTAAGACTGGAGGTAGGAATGTGGGAAAAGACAAAGGTGTCAAAGGTGAAGGTTCAGGGTTTTGGATGAAACTCAGGATGTTGTTCGCTTGCATGGCTTTGGGGTCCACGGCGGAACATCGCTCCTTAGTTGACACTAACAGCAACAATGAACAGGATAAGGGAAAGAAACCTATAAGAGATAATGGCAAAGCCCCATTGGTTGTTGAAGCATCCCCATTCAACAAAAATAATCCAGGAACAAGTGGATTTACTCCCAACCTGATTAGGGAACTGCAACAATATTCCCAACTTAGGCAGTTCACCTTTTATGAGCTCAAGTTGGCAACTAAGAATTTCAAAGATGGGAATTTTCTTGGTGAGGGAGGCTTTGGTACTGTACACAAAGGCTGGATCACTCAGAATGATTGCTCCCCATCAAGACCTGGAGTGGGAATTCCAATTGCAGTAAAGACCCTTAATATAGAAGGAAATCAGGGTCACAAAGAATGGGTGGCTGAAGTGAGCAATCTAGGTACCCTGGAACACCCCAACCTTGTTAAATTGGTTGGATACTGCATAGAAGGTGATAACAGGGTTTTGGTGTATGAGTTCATGCCGAGAGGAAGTTTAGAACATCATCTCTTTAGGAGTACGTAA 663 0.4389 MESPVGVGAKTGGRNVGKDKGVKGEGSGFWMKLRMLFACMALGSTAEHRSLVDTNSNNEQDKGKKPIRDNGKAPLVVEASPFNKNNPGTSGFTPNLIRELQQYSQLRQFTFYELKLATKNFKDGNFLGEGGFGTVHKGWITQNDCSPSRPGVGIPIAVKTLNIEGNQGHKEWVAEVSNLGTLEHPNLVKLVGYCIEGDNRVLVYEFMPRGSLEHHLFRST 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi327g00052 220 ProSiteProfiles Protein kinase domain profile. 121 220 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi327g00052 220 ProSitePatterns Protein kinases ATP-binding region signature. 127 159 IPR017441 GO:0005524
Sebi327g00052 220 MobiDBLite consensus disorder prediction 54 71 - -
Sebi327g00052 220 MobiDBLite consensus disorder prediction 1 21 - -
Sebi327g00052 220 Gene3D Phosphorylase Kinase; domain 1 96 206 - -
Sebi327g00052 220 MobiDBLite consensus disorder prediction 53 73 - -
Sebi327g00052 220 SUPERFAMILY Protein kinase-like (PK-like) 101 218 IPR011009 -
Sebi327g00052 220 FunFam Serine/threonine-protein kinase BIK1 89 206 - -
Sebi327g00052 220 PANTHER OS01G0588500 PROTEIN-RELATED 62 218 - -
Sebi327g00052 220 Pfam Protein tyrosine and serine/threonine kinase 125 218 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi327g00052 Sebi-Chr327 982930 983848 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi327g00052 39 220 Glycoside Hydrolase AT3G07070 38.172 5.79e-29 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Sebi327g00052 PK_Tyr_Ser-Thr 1.1e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi327g00052 - - gra:105798258 205.297