Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi327g00046 ATGGCTGAAGCTGCTGAGCCTAAAGCATTGCCTGAGGCAGAGAAGAAGAAGGAGCAGAGCTTACCCTTCTACAAGCTCTTCTCATTTGCAGACAAATATGACTGGACTCTCATGATCTCTGGGAGCATTGGAGCCATTATTCATGGCTCATCCATGCCTGTTTTCTTCCTTCTCTTTGGTGAAATGGTGAATGGTTTTGGCAAAAACCAAATGGACTTGAAGAAAATGACAGATGAAGTGTCTAAGTATGCTCTGTACTTCGTGTACCTTGGCCTTGTTGTTTGCATATCATCCTATGCAGAAATTGCATGCTGGATGTACACTGGGGAGAGGCAAGTGAGCACCCTGAGGAAGAAGTATTTGGAGGCAGTGCTTAAACAAGACGTTGGTTTCTTTGATACAGATGCTAGAACAGGAGACATTGTTTTCAGTGTCTCCACAGACACACTGTTAGTCCAAGATGCAATCAGCGAGAAGGTTGGGAACTTCATACATTATCTGTCAACGTTTCTTGCTGGTTTAGTGGTTGGTTTTGTGTCAGCATGGAGGCTAGCTCTTCTGAGTGTTGCAGTGATACCTGGCATTGCTTTTGCTGGTGGTTTATATGCTTACACCCTCACTGGCCTTACATCAAAGAGCCGTGAATCTTATGCAAATGCTGGCATAATTGCTGAGCAGGCCATTGCTCAAGTTAGAACTGTTTACTCTTATGTTGGGGAGAGCAAGGCACTGAATTCTTACTCTGATGCAATACAAAGCACACTGAAGCTTGGATACAAGGCAGGGATGGCTAAAGGTTTGGGTCTAGGATGCACATATGGGATAGCTTGCATGTCATGGGCACTGGTTTTCTGGTATGCTGGTGTTTTTATCAGGAATGGACAGACAGATGGAGGCAAAGCATTCACAGCTATTTCTCTGCCATTGAGTTTGGGTCAGTCATTTTCAAATTTAGGTGCTTTCAGCAAAGGCAAAGCAGCTGGATACAAATTGATGGAAATCATTAAGCAGAAACCTACCATAGTAGAAGATCCATCAGATGGAAAGTGCTTACATGACCTCAATGGAAACATTGAATTCAAAGAAGTTACTTTCAGCTACCCATCAAGGCCAGATGTGATTATCTTTCGCAATTTCTCAATATTTTTCCCTGCTGGAAAAACCGTTGCTGTTGTTGGTGGTAGTGGATCTGGAAAGAGCACTGTTGTTTCCTTGATTGAAAGATTCTATGATCCAAATGAAGGTCAGGTTCTGCTGGATAATGTGGATATTAAAACACTGCAACTAAAATGGTTACGTGATCAAATTGGGTTGGTGAATCAAGAACCTGCACTCTTTGCAACTACCATTCTTGAGAACATACTCTATGGAAAACCTGATGCAACAATGGCTGAAGTGGAAGCTGCAGCTTCTGCTGCCAATGCTCATAGCTTTATTACCTTGCTTCCTAATGGCTATAACACTCAGGTAGGAGAGCGAGGAGTGCAATTATCAGGGGGCCAAAAACAGAGAATTGCAATAGCCAGAGCTATGTTGAAAAACCCCAAGATCCTTCTTTTAGATGAAGCAACTAGTGCACTTGATGCAGGGTCTGAGAGCATTGTTCAAGAAGCACTAGACCGTCTCATGGTTGGAAGAACAACTGTAGTTGTGGCTCATCGTTTATCAACCATAAGGAATGTTGACAGCATTGCAGTTATACAACAAGGGCAAGTTGTTGAGACAGGAACACATGAAGAACTCATTGCCAAGACAGGAACCTATGCTTCACTGATCCGGTTCCAAGAAATGGTTGGAAATAGAGACTTCTCCAACCCTTCAACTCGCCGGACACGCTCGTCACGGTTGAGCCATTCTCTGTCAACAAAGTCCTTAAGCCTCAGGTCAGGTAGCTTGAGGAACTTGAGCTACCAGTACAGCACAGGAGCTGATGGTCGCATTGAGATGATCTCAAATGCTGAAACTGATAAGAAAAATCCAGCTCCTGATGGATATTTCTGCCGCTTACTCAAATTGAATGCTCCTGAGTGGCCTTACTCAATCATGGGGGCTGTTGGGTCTGTTCTTTCTGGATTCATTGGTCCAACTTTTGCTATTGTTATGAGCAATATGATTGAGGTCTTCTACTACAAAAATTATGCATCCATGGAGAGGAAGACTAAGGAGTATGTGTTCATATACATTGGTGCTGGAATTTATGCAGTTGGTGCATACTTGATACAACATTACTTCTTTAGTATCATGGGAGAAAACCTCACCACAAGGGTTAGAAGAATGATGCTAGCCGCTATTTTGAGGAATGAAGTTGGATGGTTCGATGAGGAGGAGCACAACTCAAGCCTTGTTGCTGCTCGCCTTGCTACTGATGCAGCTGATGTCAAGTCTGCTATTGCTGAGAGGATATCAGTAATTTTGCAAAACATGACATCTCTCCTCACTTCTTTCATAGTTGCTTTCATAGTGGAATGGAGGGTTTCCTTGCTCATCCTAGCAACTTTCCCTCTTCTTGTTTTGGCTAATTTTGCTCAGCAACTATCTCTTAAAGGGTTTGCTGGAGACACAGCTAAGGCTCATGCAAAGACAAGCATGATTGCAGGAGAAGGAGTAAGCAACATTAGAACAGTTGCAGCATTCAATGCACAGAACAAGATGTTGTCTGTCTTTTGCAATGAGCTTCGTGCCCCTCAACGCCAGAGCCTGCGCCGGAGCCAAACTTCCGGCCTCTTGTTTGGCCTTTCTCAGCTTGCTCTTTATGCATCTGAAGCTCTTATTCTCTGGTATGGTGCTCATTTGGTAAGCAAAGGTGTTTCAACTTTCTCAAAGGTCATCAAGGTGTTTGTTGTCTTAGTGATCACAGCAAATTCAGTGGCTGAAACTGTCAGCCTTGCGCCGGAGATAATCCGTGGTGGTGAAGCTGTTGGCTCTGTGTTCTCAATCCTTGATCGCTCAACAAGGATTGATCCTGATGATCCTGATGCTGAACTTGTTGAATCTGTTCGCGGCGAGATTGAGCTAAGACATGTTGATTTTGCATACCCTTCTAGGCCTGATGTGATGGTGTTCAAAGATCTTAACCTTAGAATCCGTGCAGGTCAGAGCCAAGCTCTTGTAGGGGCAAGTGGGTCAGGGAAGAGTTCTGTTATTGCATTGATAGAGCGTTTCTATGATCCAATTGCTGGGAAAGTCATGGTAGATGGAAAGGACATAAGGAAGCTGAATTTGAAGTCTTTGAGGCTTAAGATTGGGTTGGTGCAACAAGAGCCAGCATTGTTTGCAGCTAGCATTTTTGAGAACATTGCATATGGCAAAGATGGTGCAACAGAAGCTGAGGTGGTTGAGGCTGCACGTGCAGCCAATGTGCATGGATTTGTGAGTAGTTTGCCTGAGGGATACAAGACCCCTGTTGGTGAGAGAGGTGTGCAACTCTCTGGTGGACAAAAGCAAAGGATTGCTATTGCAAGGGCTGTTCTTAAGGACCCTGCAATACTTCTACTTGATGAGGCCACAAGTGCACTTGATGCTGAATCAGAATGTGTCCTACAAGAAGCATTGGAGAGGCTAATGAGGGGTCGCACCACAGTGCTTGTGGCTCATCGTTTGTCAACCATTAGAGGGGTTGATAGCATTGGAGTGGTGCAAGATGGGCGCATTGTAGAGCAAGGAAGCCATGGTGAACTCCTCAGCAGGCCAGAAGGAGCATATTCTAGACTCTTGCAGCTACAACATCATCACATATGA 3738 0.4436 MAEAAEPKALPEAEKKKEQSLPFYKLFSFADKYDWTLMISGSIGAIIHGSSMPVFFLLFGEMVNGFGKNQMDLKKMTDEVSKYALYFVYLGLVVCISSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQSTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAISLPLSLGQSFSNLGAFSKGKAAGYKLMEIIKQKPTIVEDPSDGKCLHDLNGNIEFKEVTFSYPSRPDVIIFRNFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNEGQVLLDNVDIKTLQLKWLRDQIGLVNQEPALFATTILENILYGKPDATMAEVEAAASAANAHSFITLLPNGYNTQVGERGVQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSESIVQEALDRLMVGRTTVVVAHRLSTIRNVDSIAVIQQGQVVETGTHEELIAKTGTYASLIRFQEMVGNRDFSNPSTRRTRSSRLSHSLSTKSLSLRSGSLRNLSYQYSTGADGRIEMISNAETDKKNPAPDGYFCRLLKLNAPEWPYSIMGAVGSVLSGFIGPTFAIVMSNMIEVFYYKNYASMERKTKEYVFIYIGAGIYAVGAYLIQHYFFSIMGENLTTRVRRMMLAAILRNEVGWFDEEEHNSSLVAARLATDAADVKSAIAERISVILQNMTSLLTSFIVAFIVEWRVSLLILATFPLLVLANFAQQLSLKGFAGDTAKAHAKTSMIAGEGVSNIRTVAAFNAQNKMLSVFCNELRAPQRQSLRRSQTSGLLFGLSQLALYASEALILWYGAHLVSKGVSTFSKVIKVFVVLVITANSVAETVSLAPEIIRGGEAVGSVFSILDRSTRIDPDDPDAELVESVRGEIELRHVDFAYPSRPDVMVFKDLNLRIRAGQSQALVGASGSGKSSVIALIERFYDPIAGKVMVDGKDIRKLNLKSLRLKIGLVQQEPALFAASIFENIAYGKDGATEAEVVEAARAANVHGFVSSLPEGYKTPVGERGVQLSGGQKQRIAIARAVLKDPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDSIGVVQDGRIVEQGSHGELLSRPEGAYSRLLQLQHHHI 1245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi327g00046 1245 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 681 968 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi327g00046 1245 Gene3D ABC transporter type 1, transmembrane domain 25 971 IPR036640 GO:0005524|GO:0016020
Sebi327g00046 1245 SUPERFAMILY ABC transporter transmembrane region 26 322 IPR036640 GO:0005524|GO:0016020
Sebi327g00046 1245 CDD ABC_MTABC3_MDL1_MDL2 1003 1241 - -
Sebi327g00046 1245 FunFam ABC transporter B family member 1 660 969 - -
Sebi327g00046 1245 FunFam ABC transporter B family member 19 970 992 - -
Sebi327g00046 1245 Pfam ABC transporter transmembrane region 681 952 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi327g00046 1245 Pfam ABC transporter transmembrane region 43 307 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi327g00046 1245 CDD ABC_6TM_Pgp_ABCB1_D1_like 38 331 - -
Sebi327g00046 1245 FunFam ABC transporter B family member 1 25 357 - -
Sebi327g00046 1245 SUPERFAMILY ABC transporter transmembrane region 662 982 IPR036640 GO:0005524|GO:0016020
Sebi327g00046 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 348 595 IPR027417 -
Sebi327g00046 1245 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 41 321 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi327g00046 1245 PANTHER ABC TRANSPORTER B FAMILY 4 693 IPR039421 -
Sebi327g00046 1245 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 358 594 IPR003439 GO:0005524
Sebi327g00046 1245 Pfam ABC transporter 1022 1170 IPR003439 GO:0005524
Sebi327g00046 1245 ProSitePatterns ABC transporters family signature. 497 511 IPR017871 GO:0005524|GO:0016887
Sebi327g00046 1245 Gene3D - 348 596 IPR027417 -
Sebi327g00046 1245 SMART AAA_5 1030 1216 IPR003593 GO:0016887
Sebi327g00046 1245 SMART AAA_5 385 676 IPR003593 GO:0016887
Sebi327g00046 1245 CDD ABC_6TM_Pgp_ABCB1_D2_like 670 986 - -
Sebi327g00046 1245 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1005 1239 IPR003439 GO:0005524
Sebi327g00046 1245 CDD ABC_MTABC3_MDL1_MDL2 358 595 - -
Sebi327g00046 1245 Gene3D - 994 1244 IPR027417 -
Sebi327g00046 1245 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 992 1241 IPR027417 -
Sebi327g00046 1245 FunFam ABC transporter B family member 19 993 1242 - -
Sebi327g00046 1245 Pfam ABC transporter 377 525 IPR003439 GO:0005524
Sebi327g00046 1245 ProSitePatterns ABC transporters family signature. 1142 1156 IPR017871 GO:0005524|GO:0016887
Sebi327g00046 1245 FunFam ABC transporter B family member 19 348 596 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi327g00046 Sebi-Chr327 711834 719577 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi327g00046 2 1241 Calmodulin-binding Proteins AT2G36910 53.402 0.0 1337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi327g00046 K05658 - gmx:100797124 2218.35