Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi327g00013 ATGATATCATGTGTTAATGGTTATGGGAGCAGTGGTTGGACTAATGCACATGCCACCTTCTATGGTGGCAGTGATGCTTCTGGAACAATGGGTGGGGCTTGTGGGTATGGAAACTTGTACAGTCAAGGTTATGGGACTAATACAGCAGCACTTAGCACTGCCTTGTTCAACAATGGCTTGAGCTGTGGAGCATGCTTTGAAATTAAATGTGTAAATGACCCACAATGGTGCCTCCCTGGCTCTATTGTAGTCACTGCCACTAATTTCTGTCCACCTGGTGGTTGGTGTGACCCTCCCAATCACCATTTTGATCTTTCTCAACCTGTTTTCCAGCACATTGCTCAATATAAAGCTGGTATTGTTCCTGTAGCTTACAGAAGGGTAAGCTGCAGAAGAAGAGGTGGAATCAGGTTCACCATCAATGGCCATTCTTACTTCAATTTAGTGCTTGTGACTAATGTTGGAGGTGCTGGTGATGTGCATTCTGTAGCAATCAAAGGTTCAAGAACTAGATGGCAAAGCATGTCAAGGAATTGGGGCCAAAACTGGCAGAGCAACTCCTACCTGAATGGACAGAGTCTTTCCTTTTTAGTCACCACTGGTAACGGTCATAGTGTGGTCTCTTACAATGTTGCCCCAGCTAGTTGGTCCTTTGGACAGACCTACACTGGAAGACAGTTCCGCTACTAA 690 0.4536 MISCVNGYGSSGWTNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDPQWCLPGSIVVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYKAGIVPVAYRRVSCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQSMSRNWGQNWQSNSYLNGQSLSFLVTTGNGHSVVSYNVAPASWSFGQTYTGRQFRY 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi327g00013 229 PRINTS Expansin signature 110 123 IPR002963 GO:0009664
Sebi327g00013 229 PRINTS Expansin signature 181 202 IPR002963 GO:0009664
Sebi327g00013 229 PRINTS Expansin signature 134 146 IPR002963 GO:0009664
Sebi327g00013 229 PRINTS Expansin signature 146 167 IPR002963 GO:0009664
Sebi327g00013 229 PRINTS Expansin signature 43 57 IPR002963 GO:0009664
Sebi327g00013 229 PRINTS Expansin signature 82 92 IPR002963 GO:0009664
Sebi327g00013 229 PRINTS Expansin signature 210 226 IPR002963 GO:0009664
Sebi327g00013 229 PRINTS Expansin signature 93 110 IPR002963 GO:0009664
Sebi327g00013 229 PRINTS Expansin signature 70 81 IPR002963 GO:0009664
Sebi327g00013 229 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 145 224 IPR007117 -
Sebi327g00013 229 Gene3D - 135 227 IPR036749 -
Sebi327g00013 229 SUPERFAMILY PHL pollen allergen 132 224 IPR036749 -
Sebi327g00013 229 SMART dpbb_1 48 125 IPR007112 -
Sebi327g00013 229 Pfam Lytic transglycolase 48 125 IPR009009 -
Sebi327g00013 229 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 31 135 IPR007112 -
Sebi327g00013 229 Gene3D - 5 131 IPR036908 -
Sebi327g00013 229 PRINTS Expansin/Lol pI family signature 52 70 IPR007118 GO:0005576
Sebi327g00013 229 PRINTS Expansin/Lol pI family signature 12 27 IPR007118 GO:0005576
Sebi327g00013 229 PRINTS Expansin/Lol pI family signature 172 186 IPR007118 GO:0005576
Sebi327g00013 229 PRINTS Expansin/Lol pI family signature 210 224 IPR007118 GO:0005576
Sebi327g00013 229 PRINTS Expansin/Lol pI family signature 30 48 IPR007118 GO:0005576
Sebi327g00013 229 PRINTS Expansin/Lol pI family signature 118 134 IPR007118 GO:0005576
Sebi327g00013 229 Pfam Expansin C-terminal domain 136 213 IPR007117 -
Sebi327g00013 229 SUPERFAMILY Barwin-like endoglucanases 8 153 IPR036908 -
Sebi327g00013 229 FunFam Expansin 2 131 - -
Sebi327g00013 229 FunFam Expansin 135 227 - -
Sebi327g00013 229 CDD DPBB_EXPA_N 12 130 - -
Sebi327g00013 229 PANTHER EXPANSIN-A15 10 227 IPR002963 GO:0009664
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi327g00013 Sebi-Chr327 157531 158842 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi327g00013 1 228 Expansin Gene Family AT2G03090 81.780 1.34e-141 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi327g00013 K20628 - gmx:100790170 456.062