Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi326g00001 ATGGCTACTGCAAGGACAGTGAAGGACGTTTCTCCCCATGAGTTCGTCAAGGCTTACTCTGCTCACCTCAAGCGATCTGGCAAGATGGAGCTTCCTGAATGGACAGACATTGTGAAGACTGCAAGATTTAAGGAGTTGGCTCCTTATGATCCAGATTGGTACTATGTTAGAGCTGCTTCCATGGCAAGAAAGATCTACTTGAGAGGAGGACTTGGTGTTGGTGCCTTTCAGAGAATTTATGGTGGGAGCAAGAGGAATGGTAGTCGCCCACCTCATTTCTGCAAGAGCAGTGGAGCTATTGCTCGTCACATTCTCCAACAGTTGCAGAACATGAGCATCATTGAACTGGACACCAAGGGGAGAATCACTTCCAGTGGTCGTCGGGATCTTGACCAAGTGGCTGGACGGATTGTGGTTGCACCTTGA 426 0.4883 MATARTVKDVSPHEFVKAYSAHLKRSGKMELPEWTDIVKTARFKELAPYDPDWYYVRAASMARKIYLRGGLGVGAFQRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMSIIELDTKGRITSSGRRDLDQVAGRIVVAP 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi326g00001 141 Pfam Ribosomal protein S19e 6 138 IPR001266 GO:0003735|GO:0005840|GO:0006412
Sebi326g00001 141 SMART Ribosomal_S19e_2 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Sebi326g00001 141 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Sebi326g00001 141 Gene3D - 1 140 IPR036388 -
Sebi326g00001 141 SUPERFAMILY "Winged helix" DNA-binding domain 6 139 IPR036390 -
Sebi326g00001 141 FunFam 40S ribosomal protein S19 2 141 - -
Sebi326g00001 141 PANTHER 40S RIBOSOMAL PROTEIN S19 2 137 IPR001266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi326g00001 Sebi-Chr326 44605 46168 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi326g00001 1 141 Cytoplasmic Ribosomal Protein Gene Family AT3G02080 83.916 2.02e-90 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi326g00001 K02966 - gmx:100305587 278.87