Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi325g00016 ATGATGTTGGCCGCCGACGTTCACCTCGGCACCAAAAACTGCGACTTTCAGATGGAACGATATGTCTTCAAGCGCCGCACTGATGGTATTTACATAATTAACCTTGGGAAGACATGGGAGAAGCTCCAACTTGCTGCTAGGATTATCGTTGCCATTGAGAACCCTCAGGATATCATTGTTCAGTCGGCCAGGCCTTATGGTCAGAGAGCAGTTCTAAAGTTTGCTCAATACACTGGCGCTCATGCAATAGCAGGAAGGCACACTCCTGGAACATTCACTAATCAGATGCAGACATCCTACAACGAGCCACGCCTTCTCATTCTAACTGATCCAAGAACAGATCATCAGCCCATTAAGGAAGGAGCTCTTGGAAATATACCAACTATTGCTTTTTGTGACACTGATTCTCCAATGCGGTATGTTGATGTTGGGATTCCTGCTAATAACAAGGGAAAACATAGCATTGGTTGTCTCTTTTGGCTATTAGCAAGGATGGTACTGCAGATGCGGGGTACTATTCGTCCAGGGCACAAGTGGGACGTAATGGTGGATTTATTCTTCTACAGAGAACCTGAGGAAACCAAGCCACAAGAGGAAGATGAAGCACCAGCTGCTCAAGATTTTGCCATTTCAGACTTCAATGCTGCTGGTATTGCCAGCTTCCCTGCTGATGGCCAATGGCCTGCTGCTGCACTTGAACAACCCTGGACTGAAGAAGTTCCACAACCAATCCCAGCAGCTCCTGGTAACTGGGCCCCGGAAGCTGTTTCCTCTCCCCTGCTGGCCAACGGCAAAGATAACAGATTCTCTATTCCATTGATAAGATGA 828 0.4734 MMLAADVHLGTKNCDFQMERYVFKRRTDGIYIINLGKTWEKLQLAARIIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQMQTSYNEPRLLILTDPRTDHQPIKEGALGNIPTIAFCDTDSPMRYVDVGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYREPEETKPQEEDEAPAAQDFAISDFNAAGIASFPADGQWPAAALEQPWTEEVPQPIPAAPGNWAPEAVSSPLLANGKDNRFSIPLIR 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi325g00016 275 PRINTS Ribosomal protein S2 signature 103 120 IPR001865 GO:0003735|GO:0005840|GO:0006412
Sebi325g00016 275 PRINTS Ribosomal protein S2 signature 141 155 IPR001865 GO:0003735|GO:0005840|GO:0006412
Sebi325g00016 275 PRINTS Ribosomal protein S2 signature 29 38 IPR001865 GO:0003735|GO:0005840|GO:0006412
Sebi325g00016 275 PRINTS Ribosomal protein S2 signature 78 95 IPR001865 GO:0003735|GO:0005840|GO:0006412
Sebi325g00016 275 PRINTS Ribosomal protein S2 signature 120 131 IPR001865 GO:0003735|GO:0005840|GO:0006412
Sebi325g00016 275 ProSitePatterns Ribosomal protein S2 signature 2. 103 127 IPR018130 GO:0003735|GO:0005840|GO:0006412
Sebi325g00016 275 PANTHER 40S RIBOSOMAL PROTEIN SA 1 254 IPR005707 GO:0003735|GO:0006412|GO:0015935
Sebi325g00016 275 Pfam Ribosomal protein S2 2 97 IPR001865 GO:0003735|GO:0005840|GO:0006412
Sebi325g00016 275 CDD RPS2 2 168 IPR001865 GO:0003735|GO:0005840|GO:0006412
Sebi325g00016 275 FunFam 40S ribosomal protein SA 1 204 - -
Sebi325g00016 275 NCBIfam 30S ribosomal protein S2 1 190 IPR005707 GO:0003735|GO:0006412|GO:0015935
Sebi325g00016 275 SUPERFAMILY Ribosomal protein S2 2 184 IPR023591 -
Sebi325g00016 275 Hamap 40S ribosomal protein SA [rps-0]. 1 230 IPR027498 GO:0003735|GO:0006412|GO:0015935
Sebi325g00016 275 Gene3D - 1 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi325g00016 Sebi-Chr325 349600 351575 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi325g00016 1 248 Cytoplasmic Ribosomal Protein Gene Family AT3G04770 76.305 1.74e-142 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi325g00016 K02998 - gmx:100786575 491.115