Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi324g00041 ATGGATGGAGTTCAACCAGAGAGATGTCATGTGCTAACTTATGGAGATGAAGAAGGGGATTTGGTCATGGTTGGAGATGTCCCTTGGGAGATGTTCTTGTCCACTGTAAAGAGGTTGAAGATCACCAGGGTAGACACATTTAGGTGTTAA 150 0.44 MDGVQPERCHVLTYGDEEGDLVMVGDVPWEMFLSTVKRLKITRVDTFRC 49
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi324g00041 49 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 9 44 IPR003311 GO:0005634|GO:0006355
Sebi324g00041 49 SUPERFAMILY CAD & PB1 domains 6 42 - -
Sebi324g00041 49 ProSiteProfiles PB1 domain profile. 1 46 IPR000270 GO:0005515
Sebi324g00041 49 Pfam AUX/IAA family 10 43 IPR033389 -
Sebi324g00041 49 Gene3D - 2 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi324g00041 Sebi-Chr324 961891 962128 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi324g00041 12 41 B3 DNA Binding Superfamily AT1G19220 50.000 3.88e-06 39.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Sebi324g00041 AUX_IAA 5.2e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi324g00041 K14484 - gmx:100818376 99.3673