Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi324g00027 ATGGAGTCAGATCTTCAGCAACACCCTCCCATGTTTCTGGACCATCAGCACCACCACCAGAACCAGATGAATTCAGGCTTAACCAGGTTCCGATCAGCTCCAAGTTCGTATTTTTCGAATATCATTGACAGAGAGTTCTACGAACACGTCTTCAATCGCCCCTCAAGCCCTGAAACAGAGCGAATTTTCCAACGGTTTGTGAATAGTCTTGGTGATGGTGACGGTGCTGCAGAGGATTCACTTGCTCAGAATCTCTCAACTGTTCAACAACAACAAGTTCCTGCAGTGAAGGAAGAGGTTAATCAACAACAGCAATCTCAGGCTATGCCAATGCCATCGATGAATAATGAACCCGTGGTTCTACAACAACAACCACAAAGCAATATGATGAATAATTTTAGTTCCTCTGCCCCTCAGAATTTTTACCAAAGCACTGGACGACCACCTTTGCCAACACAGATGAAGACTGGTCGTGCAAATAATTCGACTCTTATCAGACATGGTAGTTCACCTGCTGGATTGTTTTCAAACATCAACATTGAAAGTGGCTATGCTGCTATAAGAGGCATGGGAACTTTGGGAGCTGGTAATAACACGAGTGAGGAAGCAAAATTTTCTCCTGCAACGAGGTTGAAGAATGCACCAAACTTCTCCTCAGGGTTAATGTCATCAATAGCTGAAACTGGGAATAAAAGCAGTGCACAAAATAATCCAGAAAGTGAAGGTTTTGCTGAAAGCATCCCAGGTTTCCCTGTAGGTCCTTGGGATGATTCTGCAATGATGTCTGACAATATGACTGGTGTAAAAAGATACAGAGATGATCATGATGTTAAACCATTTTCTGGTTTAAATGCAGCTGAAAACCAGAATGAAAAAGGAGGAGGCCAGCCTCCTGCTCCTTTGGCTCATCACTTGAGTTTACCAAATACTTCAGCAGAAATGGCAGCCATTGAAAAGTTTTTGCAGTTCTCAGATTCTGTTCCTTGCAAAATTCGTGCCAAGCGTGGCTGTGCCACTCACCCAAGAAGCATTGCAGAAAGGGTTAGAAGAACTAAAATTAGTGAGCGAATGAGGAAACTACAAGATCTTGTCCCTAACATGGATAAGCAAACAAACACATCAGACATGTTGGACTTGGCTGTTGAGTACATTAAAGACCTTCAAAACCAAGTTCAGACTCTTTCAGACAATCGAGCTAAGTGTACGTGTTCACACAACAAGCAACAGCAGCAATAA 1236 0.4288 MESDLQQHPPMFLDHQHHHQNQMNSGLTRFRSAPSSYFSNIIDREFYEHVFNRPSSPETERIFQRFVNSLGDGDGAAEDSLAQNLSTVQQQQVPAVKEEVNQQQQSQAMPMPSMNNEPVVLQQQPQSNMMNNFSSSAPQNFYQSTGRPPLPTQMKTGRANNSTLIRHGSSPAGLFSNINIESGYAAIRGMGTLGAGNNTSEEAKFSPATRLKNAPNFSSGLMSSIAETGNKSSAQNNPESEGFAESIPGFPVGPWDDSAMMSDNMTGVKRYRDDHDVKPFSGLNAAENQNEKGGGQPPAPLAHHLSLPNTSAEMAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTSDMLDLAVEYIKDLQNQVQTLSDNRAKCTCSHNKQQQQ 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi324g00027 411 FunFam Transcription factor bHLH130 family 338 407 - -
Sebi324g00027 411 Coils Coil 377 397 - -
Sebi324g00027 411 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 337 387 IPR011598 GO:0046983
Sebi324g00027 411 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 33 409 - -
Sebi324g00027 411 Pfam Helix-loop-helix DNA-binding domain 342 388 IPR011598 GO:0046983
Sebi324g00027 411 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 400 IPR036638 GO:0046983
Sebi324g00027 411 MobiDBLite consensus disorder prediction 272 305 - -
Sebi324g00027 411 Gene3D - 338 410 IPR036638 GO:0046983
Sebi324g00027 411 SMART finulus 343 393 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi324g00027 Sebi-Chr324 601318 603766 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi324g00027 1 404 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 41.966 5.69e-84 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Sebi324g00027 HLH 7.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi324g00027 - - gmx:100803833 616.69