Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi323g00060 ATGGCAGCAATATGGAGGATTTCAACATTTGCTCTAGTTATGTTCCTTGTGTGCTTTTCTTCTATGCTACAAGTCCTTGGCCAAGGCAACTTAGACAAAGATGCAACTTTGAGAGTGCTTTTGGAAGTGAAGAAGTCTTTTGTGCTAGACCCACAAAATGTTTTGAGTGATTGGTCAGAGAACAACACAGAGTACTGTAATTGGAGAGGGGTGTCATGTGGATTGAACTCAAACTCTTTGGATGATGACTCGGGGCAAGTGGTTGGACTCAACCTCTCTGACTCGTCACTCACTGGGTCAATATCACCTTCACTCGGTCGTTTGCAAAACCTGCTCCACCTTGATCTCTCCTCCAATAATCTCATGGGTCCCATTCCACCAAATCTCTCTAACCTCACTTCATTGGAATCTCTGCTTCTCTTCTCTAACCAACTCACGGGTCACGTTCCTGCTGAGCTTGGCTCGCTCACGAGTCTCCGAGTCATGCGACTCGGTGATAATGCACTAACGGGTATGATTCCCGCGTCTCTTGGGAACCTGTTTAACCTGGTCAACCTTGGTTTGGCTTCATGTGGACTCACCGGGTCGATTCCACCTCAACTCGGGCAACTCAGTCTCCTGGAGAATCTGATTCTGCAAGACAATGAGTTGATGGGACCGATTCCGACCGAGTTGGGGAACTGCTCGAGTCTCACCGTTTTCACTGCTGCTGACAACAAACTCAATGGCTCGATTCCGAGTGAACTGGGTCAACTCAAGAATCTACAAATTCTCAACCTTGGCAACAACAGCCTTTCAGGGGAGATTCCGAGTCAACTCGGTGATATGAGTGAGCTTGTATACATGAATTTCATGGGGAACCAGCTTGAGGGTGCTATTCCACCGTCTCTAGCTCAACTGGGTAATCTTCAAAATCTGGACTTGTCCATGAACAAGCTCAATGGAGGAATTCCTGAAGAGTTGGGCAACATGGGTCAGTTAGCTTACTTGGTTCTGTCTGGTAACTACCTCAATGGTGTCATACCAAGAACCATGTGTTCCAATGCAACAAGTTTGGAACACTTGATGCTGTCAGAAAGTGGACTTCATGGTGAGATCCCAGCTGAGTTGGGTCTGTGCCAGTCACTGAAGCAACTTGATTTGTCTAACAATTCACTCAATGGGTCCATACCTCTTGAGCTTTATGGGTTGATTGGGTTAACTGATCTCTTGCTCAACAACAACAGCTTGATTGGTTCCATCTCTCCCTTCATAGGGAACCTCAGTAGCTTGCAGACACTTGCTTTGTTTCACAACAATTTGCAGGGTGCTCTGCCCAGAGAGATTGGAATGCTTAGCAAGTTGGAAATCTTGTATCTTTATGATAATCAATTATCAGGGGCTATACCTATGGAGATTGGCAATTGTTCAAGCTTGCAAATGATTGATTTCTTTGGAAACCGTTTCAGCGGGGAAATTCCCATTACTATTGGAAGGCTGAAAGAGTTGAATTTCCTTCACCTTAGGCAGAATGAGCTTGTGGGTGAGATTCCAGCCACATTGGGTAACTGTTATAAATTGAACATCCTGGATTTGGCGGACAATCAGCTCTCTGGTGCAATTCCTCCAACATTTGGATTCCTCAAGGCATTGCAGCAGCTCATGCTCTATAACAATTCTCTTGAAGGTAACCTTCCTCACCAACTGATAAATGTAGCAAACTTGACCAGAGTAAATCTCTCAAAGAACAGATTGAATGGCAGTATAGCTGCATTATGTAGCTCTAGATCCTTTCTTTCTTTTGATGTTACCAACAATGAGTTTGACAGCGAAATTCCCCCTCAACTGGGAAATTCACCCTCCCTTGAGAGGCTAAGATTGGGTAACAACAAATTTTCTGGTGAAATTCCAAGGACTTTGGGAAAAATCCGTGAGCTTTCATTGTTAGACCTCTCTGGAAATTCACTTACTGGACCAATACCAGCTGAGCTTTCTTTGTGCAATAAACTGGCTTACATTGACTTAAACAGTAATCTTCTTTTTGGACAAATACCATCATGGTTTGGAAGTTTGCCTCAGTTGGGAGAGGTTAAGCTCTCTTCCAATAATTTCTCTGGACCTCTTCCATTAGGCCTATTCAAATGTTCCAAATTGCTAGTTCTCACTCTAAATGACAACTCTCTCAATGGAAGTCTCCCAGCTGATATTGGTGATCTTGCAAACCTTAATGTCCTCAGACTTGATCACAATAGGTTCTCTGGACCAATCCCTCTTGAGATAGGTAAATTAAGTAAGCTTTATGAGCTCCAGCTCTCCAGGAATAGATTTAATGGTGAGATGCCAACTGAGATTGGAAAACTTCAAAATCTCCAAATCATTTTAGACCTAAGTTACAACAATCTCTCTGGTCAAATTCCACCTTCTCTTGGGACTCTATCAAAATTAGAAGCACTTGATCTTTCCCACAATCAACTCACTGGAGAAATCCCTCCACAAGTTGGTGAAATGAGCAGCTTGGGAAAGCTTGATCTCTCTTACAACAACCTTCAAGGGAAATTGGACAAGCAATTCTCCCGCTGGCCAGATGAGGCATTTGAAGGGAACCTACATCTTTGTGGAAGCCCTCTTGAACGCTGCAACAGTGATGATACTTCTGGCAATGAGCAGTCAGGCCTAAGTGAGTCAACAGTTCTGATAATATCTGTCATTTCAACTTTAGCTGCAATTGCACTATTGATATTTGCAGTGAGATTCTTCTGCAAAAACAAGCAAGAATTTTTTAGGAAAGACAGTGAAGTGAATTATGTTTACTCTTCCTCTTCATCACAAGCACAGAGACGACCACTGTTCCAACTAAATGCTGCTGGAAAGAGAGATTTCAGGTGGGAAGATATCATGGACGCCACAAACAATTTAAGTGATGACTTTATGATTGGTTCAGGAGGTTCAGGGAAAATCTACAAAGCTGAATTGGTCACTGGTGAGACACTGGCTGTTAAGAAGATTTCATCAAAAGATGATTTTCTGTTAAACAAAAGTTTCATAAGAGAAGTTAAGACACTGGGGAGGATTAGGCATAGACATCTGGTGAAGCTAATAGGATATTGCAGCAATAGAAACAAAGAAGCAGGTTGGAATCTGTTGATATATGAGTACATGGAGAATGGGAGTATATGGGATTGGCTTCATGGGAAACCAGCCAAGGCTAGCAAAGTAAAGAAGAGCCTTGATTGGGAGACAAGGTTGAAAATTGCTGTGGGATTAGCTCAAGGAGTGGAGTACCTCCATCATGATTGTGTGCCAAAGATCATTCACAGGGACATCAAATCCAGCAATGTATTGCTAGATTCCAAAATGGAGGCACACTTGGGAGATTTTGGATTGGCAAAAGCACTCACTGACAATTATGACTCCAATACTGAGTCTAATTCTTGGTTTGCTGGGTCTTATGGCTACATGGCTCCAGAGTATGCATTCTCCCTACGGGCAACAGAAAAAAGTGATGTTTACAGCATGGGAATCGTTCTTATGGAACTTGTTAGTGGTAAAATGCCAACAAATGACATTTTTGGGGCAGAGATGGACATGGTGAGATGGGTGGAGACGCATATTGATATGCATGGCTCTGCCCGAGAGGAATTGATAGATCCTGAGCTTAAACCTCTTTTACCTGGCGAAGAGCTTGCTGGATTCCAAGTGCTTGAGATAGCCTTACAATGCACCAAAGCTACACCACAAGAGAGGCCATCTTCAAGGAAAGTATGCGATCTTCTCCTCCACGTATTCAACAACAGAATGGTGGACTCTGAGAAGATGAAGTTGCATCGTTACAAGTAA 3816 0.4316 MAAIWRISTFALVMFLVCFSSMLQVLGQGNLDKDATLRVLLEVKKSFVLDPQNVLSDWSENNTEYCNWRGVSCGLNSNSLDDDSGQVVGLNLSDSSLTGSISPSLGRLQNLLHLDLSSNNLMGPIPPNLSNLTSLESLLLFSNQLTGHVPAELGSLTSLRVMRLGDNALTGMIPASLGNLFNLVNLGLASCGLTGSIPPQLGQLSLLENLILQDNELMGPIPTELGNCSSLTVFTAADNKLNGSIPSELGQLKNLQILNLGNNSLSGEIPSQLGDMSELVYMNFMGNQLEGAIPPSLAQLGNLQNLDLSMNKLNGGIPEELGNMGQLAYLVLSGNYLNGVIPRTMCSNATSLEHLMLSESGLHGEIPAELGLCQSLKQLDLSNNSLNGSIPLELYGLIGLTDLLLNNNSLIGSISPFIGNLSSLQTLALFHNNLQGALPREIGMLSKLEILYLYDNQLSGAIPMEIGNCSSLQMIDFFGNRFSGEIPITIGRLKELNFLHLRQNELVGEIPATLGNCYKLNILDLADNQLSGAIPPTFGFLKALQQLMLYNNSLEGNLPHQLINVANLTRVNLSKNRLNGSIAALCSSRSFLSFDVTNNEFDSEIPPQLGNSPSLERLRLGNNKFSGEIPRTLGKIRELSLLDLSGNSLTGPIPAELSLCNKLAYIDLNSNLLFGQIPSWFGSLPQLGEVKLSSNNFSGPLPLGLFKCSKLLVLTLNDNSLNGSLPADIGDLANLNVLRLDHNRFSGPIPLEIGKLSKLYELQLSRNRFNGEMPTEIGKLQNLQIILDLSYNNLSGQIPPSLGTLSKLEALDLSHNQLTGEIPPQVGEMSSLGKLDLSYNNLQGKLDKQFSRWPDEAFEGNLHLCGSPLERCNSDDTSGNEQSGLSESTVLIISVISTLAAIALLIFAVRFFCKNKQEFFRKDSEVNYVYSSSSSQAQRRPLFQLNAAGKRDFRWEDIMDATNNLSDDFMIGSGGSGKIYKAELVTGETLAVKKISSKDDFLLNKSFIREVKTLGRIRHRHLVKLIGYCSNRNKEAGWNLLIYEYMENGSIWDWLHGKPAKASKVKKSLDWETRLKIAVGLAQGVEYLHHDCVPKIIHRDIKSSNVLLDSKMEAHLGDFGLAKALTDNYDSNTESNSWFAGSYGYMAPEYAFSLRATEKSDVYSMGIVLMELVSGKMPTNDIFGAEMDMVRWVETHIDMHGSAREELIDPELKPLLPGEELAGFQVLEIALQCTKATPQERPSSRKVCDLLLHVFNNRMVDSEKMKLHRYK 1271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi323g00060 1271 SMART serkin_6 965 1256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi323g00060 1271 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1096 1108 IPR008271 GO:0004672|GO:0006468
Sebi323g00060 1271 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 33 200 - -
Sebi323g00060 1271 SMART LRR_typ_2 373 397 IPR003591 -
Sebi323g00060 1271 SMART LRR_typ_2 684 708 IPR003591 -
Sebi323g00060 1271 SMART LRR_typ_2 252 276 IPR003591 -
Sebi323g00060 1271 SMART LRR_typ_2 108 132 IPR003591 -
Sebi323g00060 1271 SMART LRR_typ_2 636 660 IPR003591 -
Sebi323g00060 1271 SMART LRR_typ_2 421 444 IPR003591 -
Sebi323g00060 1271 SMART LRR_typ_2 541 565 IPR003591 -
Sebi323g00060 1271 SMART LRR_typ_2 493 517 IPR003591 -
Sebi323g00060 1271 SMART LRR_typ_2 805 827 IPR003591 -
Sebi323g00060 1271 SMART LRR_typ_2 300 324 IPR003591 -
Sebi323g00060 1271 SMART LRR_typ_2 204 228 IPR003591 -
Sebi323g00060 1271 SMART LRR_typ_2 156 179 IPR003591 -
Sebi323g00060 1271 SMART LRR_typ_2 829 860 IPR003591 -
Sebi323g00060 1271 SMART LRR_typ_2 445 469 IPR003591 -
Sebi323g00060 1271 SMART LRR_typ_2 732 756 IPR003591 -
Sebi323g00060 1271 Gene3D Phosphorylase Kinase; domain 1 925 1045 - -
Sebi323g00060 1271 ProSiteProfiles Leucine-rich repeat profile. 807 829 IPR001611 GO:0005515
Sebi323g00060 1271 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 610 1251 - -
Sebi323g00060 1271 Gene3D Transferase(Phosphotransferase) domain 1 1046 1269 - -
Sebi323g00060 1271 Pfam Protein kinase domain 970 1248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi323g00060 1271 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 584 876 - -
Sebi323g00060 1271 Pfam Leucine rich repeat N-terminal domain 38 73 IPR013210 -
Sebi323g00060 1271 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 293 392 - -
Sebi323g00060 1271 Gene3D Ribonuclease Inhibitor 539 876 IPR032675 -
Sebi323g00060 1271 Gene3D Ribonuclease Inhibitor 239 398 IPR032675 -
Sebi323g00060 1271 SUPERFAMILY L domain-like 46 390 - -
Sebi323g00060 1271 FunFam Uncharacterized protein 393 486 - -
Sebi323g00060 1271 PRINTS Leucine-rich repeat signature 376 389 - -
Sebi323g00060 1271 PRINTS Leucine-rich repeat signature 805 818 - -
Sebi323g00060 1271 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 487 583 - -
Sebi323g00060 1271 Pfam Leucine Rich Repeat 254 271 IPR001611 GO:0005515
Sebi323g00060 1271 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 926 1045 - -
Sebi323g00060 1271 Pfam Leucine rich repeat 758 818 IPR001611 GO:0005515
Sebi323g00060 1271 Gene3D Ribonuclease Inhibitor 153 238 IPR032675 -
Sebi323g00060 1271 FunFam Leucine-rich repeat receptor-like protein kinase 1046 1268 - -
Sebi323g00060 1271 SUPERFAMILY L domain-like 590 851 - -
Sebi323g00060 1271 ProSiteProfiles Protein kinase domain profile. 965 1256 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi323g00060 1271 SUPERFAMILY L domain-like 347 673 - -
Sebi323g00060 1271 SUPERFAMILY Protein kinase-like (PK-like) 949 1251 IPR011009 -
Sebi323g00060 1271 Gene3D Ribonuclease Inhibitor 35 152 IPR032675 -
Sebi323g00060 1271 Gene3D Ribonuclease Inhibitor 470 538 IPR032675 -
Sebi323g00060 1271 Gene3D Ribonuclease Inhibitor 399 469 IPR032675 -
Sebi323g00060 1271 ProSitePatterns Protein kinases ATP-binding region signature. 971 994 IPR017441 GO:0005524
Sebi323g00060 1271 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 206 277 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi323g00060 Sebi-Chr323 927780 931674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi323g00060 39 709 Receptor kinase-like Gene Family AT1G17750 37.518 1.85e-103 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Sebi323g00060 Pkinase 6.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi323g00060 - - gmx:100801889 2147.86