Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi323g00058 ATGGCATCTTCCCAGATTGAAATCGCTTCCTCTTCTCCATTTGGTTGCGTTTTGATAGACCATAATCGTCGTGATTCAGCACAAAACCAGAACACTAAAAAACCAATCAGCAATTCATCTATTTGGGCCTCAAGAATTGCTAAGAACAACCTTGAAAGCCTAAAACTTGACAAAATTTGCAGAGACAACAAAGATGGTTCTTCTTCTTCATTGTCTGCATTGATGAGCCCGAGACACTCAAGGATCATTGATCGATGGGCTGCAAGACAAGCTCGAGAAGTGGTGACAACACTTGAGAAAGAGGTTGAGGTGTTTGAAAATTTTCCTTCAAGGTCATGTAGTTTCAATTCTAGGAGAGAGGTTTCTGTGTCCCCTCCTCGTTCTGATGACTCATCTGATAGTGAAATCTCAAACCTTGGAGCTTCTTCTCTTGTTCAGATATGGGAAAAGAGGCTCAACAAATCCAACAGCACCAAACCAAATGCACTAGTTTCACCTGGAAGGACTAGTCTTGATAATGCAAGCTGCAATGAGAATGCATGTTCTGTGGAAGAACATTGTAGGGTCTCAGAAGAAGGGGAATCCAATGATGAACCCCAATGTAATGAGGAATCATCCCCAGATTGGGAATTTGATAAAACAGGACCAAGTGATCAATCATGTTCATCAAAATTGCAGAGTTCTGATGCTGCTGAAAGAGAGAGGGGAAGGGTTGCAAATATTATCAAGAGACTCACGGTAACAAATCAAATGCAAAGTCTAGTGTCATCATTGAATGATGACAATGATCAAGAGCAATGCAGTGGTATGACAGGTTCTCCACATAGAGAACACAAAGCTTTTGGTCAAGTCATAACTTGCCCACGTATTAGGGGGCGCCAAGCATTCAATGATTTGATTATGCAGTTTGAGAGTGACCGACATGGAGAGCTTAAAAATCTTGCAGAGAGAGGTGCAGTTTCCAAGTTCAATCAAAGAGGTCGTATTCAGTCATTGCTTCGACTTAGATTATTGCAACGTGGAGTAGCAGTTTTTGATCAATCCCACCAGAAATCATCAGTATCTGAAGTTAATAGACAACAACAAGGATCAGCAATTATGCAACTAAGGGAAAGATTTAAGATAAGAAATGAACATAGAACTTCAACTCTGGCAGAAGTATCTGATCCAAGAAGTCCTAGTAGAGAGATAGTAAGCAGCACCAGCACCACACAAATGGATAACTTCCCCACCTCTAATCAGCTCAGCAAAGATACTCACTACAGGACAGTTTACTGTAAAGAACCTACACAGAACTCTGTGTCTCAAACTAGTGCAGATGACAAAGAACAAGCTCATCCAAGTTCAGATGCCACATTCCAAGGAACATGCTTTGAAGCTCAAAATGTTGATACAAAAGAAACTATTGGGGCATCTCCATCCATTGCTGAATCAAATGCAAATGAGACAGCAGAAAAAGTAGAAGCAAGGGAACAGCAGTATGCTACTGCTGAAACAAGCTATGATGAGATAGTAGAAGAGGAAGAAGCCAGTGACCAGAATTATGATGAAGCTCGTTATGACTGGACAAGTCATATTTCTCGGCCTAGGAGCTATTGGGAAGAACTCAGGCAAGAATGGTATAGGGAAATGCTTGATTTTGGTTCAGACAATGATGAGAGACATCATGAACTTGGTGATTATTTCAATCAATCCTCACCATCAATGCATACACCTTCCTCAACATGGAGTTATAGAGACAATGATGCTGGTGATGATTCTGATAGAGTTGCATCTGTATCCTCACCACTACCTTCTCAATCTCAGTCTTTCTATCAAGATAGACGACAATACTCTTCATCCACAAATCATCATTCAATTGAAATGGAATTCATATATGATATGAGAGGGCAAATGGATCAACTTTTTCATGAGATGTCTGAGCTAAGGAAATCATTAAAGATCTGCATGGACATGCAGATGCAATCACAACAATTCAAGAATCAAGAGGTTCACACAGTTAAGGAAGAAAGGAAGAAGTTCCATAACAAGACACCAAAGAAAGGCAACTGTTGGATTTGCCATGAGAAGAAAGTGAACTCAGTATTATACAGATGTGGGCATATGTGTGCGTGTCTCAAGTGTGCCAATGAGTTACAATGGAACAGTGGAAAATGTCCAATATGTCGAGCTCCAATAATAGATGTTGTCCGAGTATATACTAACACAGAACTTTTAGTGGTTGACAGAGTCTAG 2235 0.4036 MASSQIEIASSSPFGCVLIDHNRRDSAQNQNTKKPISNSSIWASRIAKNNLESLKLDKICRDNKDGSSSSLSALMSPRHSRIIDRWAARQAREVVTTLEKEVEVFENFPSRSCSFNSRREVSVSPPRSDDSSDSEISNLGASSLVQIWEKRLNKSNSTKPNALVSPGRTSLDNASCNENACSVEEHCRVSEEGESNDEPQCNEESSPDWEFDKTGPSDQSCSSKLQSSDAAERERGRVANIIKRLTVTNQMQSLVSSLNDDNDQEQCSGMTGSPHREHKAFGQVITCPRIRGRQAFNDLIMQFESDRHGELKNLAERGAVSKFNQRGRIQSLLRLRLLQRGVAVFDQSHQKSSVSEVNRQQQGSAIMQLRERFKIRNEHRTSTLAEVSDPRSPSREIVSSTSTTQMDNFPTSNQLSKDTHYRTVYCKEPTQNSVSQTSADDKEQAHPSSDATFQGTCFEAQNVDTKETIGASPSIAESNANETAEKVEAREQQYATAETSYDEIVEEEEASDQNYDEARYDWTSHISRPRSYWEELRQEWYREMLDFGSDNDERHHELGDYFNQSSPSMHTPSSTWSYRDNDAGDDSDRVASVSSPLPSQSQSFYQDRRQYSSSTNHHSIEMEFIYDMRGQMDQLFHEMSELRKSLKICMDMQMQSQQFKNQEVHTVKEERKKFHNKTPKKGNCWICHEKKVNSVLYRCGHMCACLKCANELQWNSGKCPICRAPIIDVVRVYTNTELLVVDRV 744
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi323g00058 744 MobiDBLite consensus disorder prediction 212 227 - -
Sebi323g00058 744 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 662 743 IPR013083 -
Sebi323g00058 744 MobiDBLite consensus disorder prediction 469 494 - -
Sebi323g00058 744 MobiDBLite consensus disorder prediction 258 277 - -
Sebi323g00058 744 MobiDBLite consensus disorder prediction 380 416 - -
Sebi323g00058 744 MobiDBLite consensus disorder prediction 386 416 - -
Sebi323g00058 744 MobiDBLite consensus disorder prediction 429 453 - -
Sebi323g00058 744 MobiDBLite consensus disorder prediction 556 612 - -
Sebi323g00058 744 SUPERFAMILY RING/U-box 683 730 - -
Sebi323g00058 744 ProSiteProfiles Zinc finger RING-type profile. 684 723 IPR001841 -
Sebi323g00058 744 CDD mRING-HC-C3HC5_NEU1 681 733 - -
Sebi323g00058 744 MobiDBLite consensus disorder prediction 191 236 - -
Sebi323g00058 744 MobiDBLite consensus disorder prediction 116 137 - -
Sebi323g00058 744 MobiDBLite consensus disorder prediction 592 612 - -
Sebi323g00058 744 MobiDBLite consensus disorder prediction 561 580 - -
Sebi323g00058 744 Pfam Zinc finger, C3HC4 type (RING finger) 681 728 - -
Sebi323g00058 744 PANTHER BNAC05G24000D PROTEIN 1 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi323g00058 Sebi-Chr323 916948 921055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi323g00058 684 736 C3H Transcription Factor Family AT3G06140 39.623 1.15e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi323g00058 - - cam:101500244 561.992