Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi323g00043 ATGGCACGGAAAGTGAACTCAATTGAAGAAGTTGATCACATGTTTGAAGCCTGGAAACTTGCTGTTAAGATAGCACATCTATGGTTTGTTCAGACAAAGGGCCAACCCTCTATTGAGATGGGACACAAAATAGGTGCTATAGTGAATAGTTGTGATTCTAACAAATGGAGCAACCAACTCAACGAGGGTGAGACTTATATTATGCAAAACTTTGAGATTGAAAAGAACACTGGGCAATATAAGGTAAGCAAGCATCCATTCAAATTACTCTTCATAAAAGGAACAATAGTAAAAGAGCAACAGATTCCCAATATTCCTCCCAACATTTATGAATTTATAAGCTTTGAAGACATTCTGAGTGGAAAGGCTTCTCCTGATGTGTTAGTAGATGTCATTGGTCAGTTTCTGGACATAGAACAAGATCAGCAACATAAGGGGAAAAGGAAGTTGGTTATTAGAATGAGAGACCAAGGGAGCAACACCCTTTCTTGCACTTTATGGGGTGCATATGCTACTAAGTTGTTGAATTTTTTAGAGCAACCTGAAACTGGCCCAGTTATTATAATTCTAACATTAGCCAAGATAAAGGACACAAATGGTCAATTTCCAATTAGTATACAGAATTCTATGTATGGTTCAAAGCTTCTAATCAATGAAGACATTATACAGATCCAGGAGTACAAGAACAGTCTGGACTCTATTCCTATTTGTGAGTCATTTAGTCAAGGCATTTCTCAGTTTTCACAAGCCACTCAATGTATTACTGTAGACAAGTTTTGTATCAATGCTGAAGTTAAGAGTGTGAAGGAGATAAATGAGGTGGACCGGGATGTGTATTGTGTAACGGTTGCAAAAATAGACAAATTCTTTGTTGCAAATGGCTGGAAGTATGATGCATGCTCTAAGTGCAACACAAAAGGTGATCCTGCAGCAGCACCATACATATGTAGAGGTTGTGGGAAGAATATCACAGAAACAATTATAAGGTATAAACTAGAAGTTCAAGTTTCTCACCAAAAAGAATGTGCAAAGTTTGTGTTGTGGGATAAACAGTGTGTTCAATTGTTGGGGGTATCTGCAGCTGAGCTTAGCAACCAATTAATTGAGGTTTTGACTGATGGTGAACTTGACCCAATGGCATTTCCTGAAGCCATTGATGGTATTTTGGGAAAGACATTAGCCTTTAGAGTAAAAGTTCAGCCAACCTATGGAAAGTCTTCTGTCAACCAAATTTCTGATGATGCACAAATCATAGAATCAATCCTGGGAAACCTACCAATTCATGAGGACCCAATCATCTCCTGTAATAAAGGAAAGTCAGTGTTGGATGTAGCTGATTTGAATGATAGTCAATCCTTTTCTGCAACAGCAGACTATGATCCAGGCTTGCTTGGACAACTAACTCCTGCTAAAAGGCAATCACTTGAAGAGCAGCTTGATGACCAAGGATCTCAGTATTTGCAATCATGTCAGCTGTCATCTAACAAGCTGACTAAGATTATTAAAACTGAATGA 1515 0.3828 MARKVNSIEEVDHMFEAWKLAVKIAHLWFVQTKGQPSIEMGHKIGAIVNSCDSNKWSNQLNEGETYIMQNFEIEKNTGQYKVSKHPFKLLFIKGTIVKEQQIPNIPPNIYEFISFEDILSGKASPDVLVDVIGQFLDIEQDQQHKGKRKLVIRMRDQGSNTLSCTLWGAYATKLLNFLEQPETGPVIIILTLAKIKDTNGQFPISIQNSMYGSKLLINEDIIQIQEYKNSLDSIPICESFSQGISQFSQATQCITVDKFCINAEVKSVKEINEVDRDVYCVTVAKIDKFFVANGWKYDACSKCNTKGDPAAAPYICRGCGKNITETIIRYKLEVQVSHQKECAKFVLWDKQCVQLLGVSAAELSNQLIEVLTDGELDPMAFPEAIDGILGKTLAFRVKVQPTYGKSSVNQISDDAQIIESILGNLPIHEDPIISCNKGKSVLDVADLNDSQSFSATADYDPGLLGQLTPAKRQSLEEQLDDQGSQYLQSCQLSSNKLTKIIKTE 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi323g00043 504 Pfam Replication factor-A C terminal domain 283 401 IPR013955 -
Sebi323g00043 504 CDD RPA1_DBD_C 265 399 IPR047192 -
Sebi323g00043 504 Gene3D - 104 235 IPR012340 -
Sebi323g00043 504 SUPERFAMILY Nucleic acid-binding proteins 6 99 IPR012340 -
Sebi323g00043 504 CDD RPA1_DBD_A_like 19 97 - -
Sebi323g00043 504 SUPERFAMILY Nucleic acid-binding proteins 110 233 IPR012340 -
Sebi323g00043 504 Gene3D - 255 421 IPR012340 -
Sebi323g00043 504 PANTHER OS03G0429900 PROTEIN 139 402 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Sebi323g00043 504 Pfam Domain of unknown function DUF223 39 128 IPR003871 -
Sebi323g00043 504 SUPERFAMILY Nucleic acid-binding proteins 268 401 IPR012340 -
Sebi323g00043 504 Gene3D - 2 99 IPR012340 -
Sebi323g00043 504 CDD RPA1_DBD_B_like 130 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi323g00043 Sebi-Chr323 764178 766671 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi323g00043 1 365 Core DNA Replication Machinery Family AT5G08020 20.513 1.20e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi323g00043 - - gmx:102667313 391.349