Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi323g00028 ATGTTAGACAACAGTGCTTCTTCAGGTGCACCTTCTTCTTCTTGTGATGCTGCCTTTGCATTATGTGAAAATGGGATTACTAATAACAAAAGAAAAAGAAGACCAGCAGGCACACCCGATCCAGATGCTGAGGTTGTGTCCCTCTCACCAAAGACCTTGTTGGAATCTGACAGATATGTGTGTGAGATCTGCAACCAAGGGTTTCAGAGGGACCAGAATCTTCAAATGCATAGGAGAAGACATAAGGTGCCATGGAAATTGCTGAAAAGGGAAACACAAGGGCAGAAGAAAAGGGTATTTGTTTGCCCTGAACCAAGTTGTTTACACCATGACCCTTGTCATGCCCTTGGTGACCTTGTGGGAATTAAGAAGCACTTTAGAAGGAAGCATAGCAATCACAAGCAGTGGGTTTGTGACAAGTGTTCTAAAGGGTATGCAGTTCAATCTGATTACAAAGCTCACATCAAAACCTGTGGCACCAGAGGCCATTCGTGTGACTGTGGCCGTGTGTTTTCCAGGGTTGAAAGTTTCATAGAACATCAAGATACATGCACAGTCCGGCAACACAGGCCAGAGTTACAAGTACTTCAACCTGCATGCTCTTCTAGAACAGCTTCAAGCACAAGTCCATCAAGTGAGGCAAATTTTAGTATAGCCCCATTGCAAGGACTTCCACTGCCAAAACCAGCTGAACAGCCACCAGCTGGTTTATTAACTTCAGAGATATTACACAATAAGCCCAGCACCTCCTCACATCAGAGGCAGCATAACTTAGAACTTCAGCTTTTACCTTCTTCAATAAATTCTCAAGAGAAAATTAGAACCTCAAAGGAAAACCATGAAACAACCAATTTGAAACTCTCAATAGGTTCATGTAGTAATAACAACAATGACAAAGGGATTAGTACTCATGAACAATCAGAGAGACCATGTTCAGAAACAGTAGCACATTTGAGTCCACCTAACATTGTGAATGATTCCTCCACATTGGAAGTTGCAAGGTTGAAAGAGTTTACTAGTGAGGAGCTCAAGTTGGCTATGGCAGAAAAGGCTTATGCAGAAGAGGCTAGAAGAGAAGCTAAGCATCAAATTGAGATAGCTGAACTTGAGTTTGAGAATGCAAAAAGGATAAGGAAACAAGCACAAGCTGAGCTTGGAAAGGCTGAAGCTTTGAGAAAACAAGCAATCAAGAAGATAAGCTCAACTGTTATGGAAATAACCTGTCAAGCTTGCAAGCAACAGTTTCAGTCCTCAACTGTTGGGGTTCCATCAGAAGAGACTTCCATTGTGATGAGTTACATGTCTTCAGTAAACACAGAAGGTGAAGCAGATCAATGA 1338 0.4215 MLDNSASSGAPSSSCDAAFALCENGITNNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETQGQKKRVFVCPEPSCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCDKCSKGYAVQSDYKAHIKTCGTRGHSCDCGRVFSRVESFIEHQDTCTVRQHRPELQVLQPACSSRTASSTSPSSEANFSIAPLQGLPLPKPAEQPPAGLLTSEILHNKPSTSSHQRQHNLELQLLPSSINSQEKIRTSKENHETTNLKLSIGSCSNNNNDKGISTHEQSERPCSETVAHLSPPNIVNDSSTLEVARLKEFTSEELKLAMAEKAYAEEARREAKHQIEIAELEFENAKRIRKQAQAELGKAEALRKQAIKKISSTVMEITCQACKQQFQSSTVGVPSEETSIVMSYMSSVNTEGEADQ 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi323g00028 445 Coils Coil 350 398 - -
Sebi323g00028 445 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
Sebi323g00028 445 SMART c2h2final6 100 130 IPR013087 -
Sebi323g00028 445 SMART c2h2final6 59 81 IPR013087 -
Sebi323g00028 445 SMART c2h2final6 136 163 IPR013087 -
Sebi323g00028 445 MobiDBLite consensus disorder prediction 200 235 - -
Sebi323g00028 445 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 18 409 IPR031140 -
Sebi323g00028 445 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 81 IPR013087 -
Sebi323g00028 445 SUPERFAMILY beta-beta-alpha zinc fingers 58 156 IPR036236 -
Sebi323g00028 445 FunFam protein indeterminate-domain 12-like 38 106 - -
Sebi323g00028 445 Gene3D Classic Zinc Finger 121 197 - -
Sebi323g00028 445 MobiDBLite consensus disorder prediction 200 218 - -
Sebi323g00028 445 Gene3D Classic Zinc Finger 37 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi323g00028 Sebi-Chr323 448015 450375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi323g00028 23 444 C2H2 Transcription Factor Family AT2G01940 56.291 9.33e-159 454
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi323g00028 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi323g00028 K25871 - gmx:100806138 657.521