LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi322g00028	ATGGAAGAGAATACTAATACCAATTCTGAGGCGCATTTGACTTCTGCCGCTGCTTTTGTGGAGGGTGGAATCCAGGATGCTTGTGATGATGCTTGCAGCATATGCCTTGAAGCCTTCTGTGACAGTGATCCTTCCACGGTGACAAGTTGTAAGCACGAGTTTCATCTTCAGTGCATTCTGGAATGGTGTCAGAGAAGCTCCCAGTGCCCTATGTGTTGGCAAGCTATCAGTCTCAAAGATCCAACGAGCCAGGAATTGCTTGAGGCGGTGGAAAGAGAGAGGAACTTTAGATTCAATCCTTCTAGAAATGCCACAATATTTCATCATCCAACACTGGGAGATTTTGAATTACAACACTTGCCAGTTGGAGCAAATGATGCTGATCTTGAAGAGCGTATAATCCAACACCTAGCTGCTGCTGCAGCCATGGGGCGAGCACGTCATATTGCCAGAAGGGAAGGCCAGAGAAACAGGTCATCAGCTCAAGGTCGTCCACATTTTTTGGTATTTTCAACTCATCCTAATTCACCTCCCATGGCTCCGGCTTCTTCCTCTCCAACTCAGAGGGGGGATGGTGAACCAGCTCCTGCAATTGCTGTTGCCACTCTATCTCCAACTCCTGCAACTGGAGAAGGATCACCACAGCTGACTTTAGTTCCTCCTGTTCAAGCTGATCAGATTTCAGCTTCAGGATCTGGGTCTACTGCTCTTGCTACTGATCATCAAGGATCATCTTACAACAGGAGATCTCCTAGTCATTCTTCTCCAAGCAGTCAAGATAGAGCAGGGCCATCAGAATTCCAGTCATTTTCAGAATCTCTGAAATCTAAGCTAAATGCTGTGTCAACAAGATACAAAGAGTCGATTTCCAAGAGCACAAAAGGTTGGAAGGAGAGATGGTTCTCTCGTAACACCTCTATGTCTGATCTTGGATCTGAAGTTAAGCGAGAAGTTAATGCAGGAATTGCAACTGTGTCGCGCATGATGGAACGCCTGGAGACTAGAGACAGTAGTAGAAGCAGTAGCAATTCTGCTCCAAGTAATGTAGAGGATGGTTCAGCTCAGGGATCAAATGATCATCAGCATTTAACAAACACTGAAGGGGACGGTCCTTTGAGAGACAATAACACTAAAACATCTTGTGCTGCTGGTGGTTCTAGTTCAAATTAA	1170	0.4564	MEENTNTNSEAHLTSAAAFVEGGIQDACDDACSICLEAFCDSDPSTVTSCKHEFHLQCILEWCQRSSQCPMCWQAISLKDPTSQELLEAVERERNFRFNPSRNATIFHHPTLGDFELQHLPVGANDADLEERIIQHLAAAAAMGRARHIARREGQRNRSSAQGRPHFLVFSTHPNSPPMAPASSSPTQRGDGEPAPAIAVATLSPTPATGEGSPQLTLVPPVQADQISASGSGSTALATDHQGSSYNRRSPSHSSPSSQDRAGPSEFQSFSESLKSKLNAVSTRYKESISKSTKGWKERWFSRNTSMSDLGSEVKREVNAGIATVSRMMERLETRDSSRSSSNSAPSNVEDGSAQGSNDHQHLTNTEGDGPLRDNNTKTSCAAGGSSSN	389

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi322g00028	389	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	12	81	IPR013083	-
	Sebi322g00028	389	ProSiteProfiles	Zinc finger RING-type profile.	32	72	IPR001841	-
	Sebi322g00028	389	SMART	ring_2	32	72	IPR001841	-
	Sebi322g00028	389	MobiDBLite	consensus disorder prediction	148	195	-	-
	Sebi322g00028	389	PANTHER	ZINC FINGER, RING/FYVE/PHD-TYPE	9	81	-	-
	Sebi322g00028	389	SUPERFAMILY	RING/U-box	25	80	-	-
	Sebi322g00028	389	FunFam	E3 ubiquitin-protein ligase RHF2A	3	106	-	-
	Sebi322g00028	389	Pfam	Ring finger domain	31	72	IPR001841	-
	Sebi322g00028	389	MobiDBLite	consensus disorder prediction	176	190	-	-
	Sebi322g00028	389	CDD	RING-H2_RHF2A	19	81	-	-
	Sebi322g00028	389	MobiDBLite	consensus disorder prediction	338	389	-	-
	Sebi322g00028	389	MobiDBLite	consensus disorder prediction	329	389	-	-
	Sebi322g00028	389	MobiDBLite	consensus disorder prediction	226	271	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi322g00028	Sebi-Chr322	651564	654063	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi322g00028	29	80	C3H Transcription Factor Family	AT5G15790	42.308	2.60e-11	61.2