Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi322g00003 ATGAAGGACCCTGTGACAACAGTGACAGGCATAACATACGACAGAGAAAGCATTGAACACTGGTTGCTAACTGCAAAAAACTGCACTTGCCCTGTTACCAAACAACCATTACCAAGAAGCACAGAGTTTCTTACACCAAACCACACACTTCGAAGGCTAATCCAAGCATGGTGTTCAACAAACTCAGCAAATGGCGTTGACCGTATTCCAACCCCGAAATCCCCATTAGACAAAGCTCACGTTGAGAAACTCGTGAAGGATCTTGATTCTCCACGCTGTTTTCAATTCACACTTGAGAAATTACATGCTCTTGCAACAGAGAGTGAGAGGAACAGAAGGTGCATGGCTGAATCAGGAGTAGCAAAAGCCATGATTCGTTTGATTACAAAGATTTTCAAGCAAGGTAACACAACTTTCCTTGAAGAATCTCTGAGAATCCTTCGATTACTCTGGAGTGATAATGTTAACATGAAACGCTTAATTGATGAAAGCTTTGACTTTTTCAACTCGTTGACTTGGATTTTGCAACTTCATCACAACGATGTCAAGGTGATAAATGAAGCAATGCCTATAATGAAATTGGCAATTGAAGTGAAAGATTCAACCTTTTTGGGTAACTTAAAGGTTGAATTTTTCAGGGGAATTATCATGAGTGTACTAAAAAATAGAGCAATTTCTCAGCAGGCTATTAAATCTGCATTGCATGTACTCATAGAAACATGTCCTTTGGGTAGAAATAGGATGAAGATTGTGGAAGCAAGTGCAGTAACAGAACTCATTGAGCTTGCACTTGAGAAATTAGAAAAGAGTGTAACAGAGCTTATATTTATACTTTTGGCACATCTCTGTTCTTGTGCTGATGGGAGAGAACAGTTTCTAAAGCATGCAGGGGGTATAGCAGTGCTTTCTAAGAGAACATTAAGGGTTTCTCCAACAACAGATGATAGAGCTCTTCATGTGTTTTCATTGATTTCAAAATACTCAGCATCTAATGAGGTTGTTCAAGAGATGTTGAGGGTTGGTGCTGTGTCAAAGCTTTGCATGGTGATGCAAGCAGATTGTGCTTCTTATTTGAAAGAAAAAGCAAGAGGTATACTTAGGTTACACTCAAGAGCATGGAATAATTCTCCTTGCATTCAAGTGTATTTGTTAACAAGACACCAAAGGTGA 1170 0.3915 MKDPVTTVTGITYDRESIEHWLLTAKNCTCPVTKQPLPRSTEFLTPNHTLRRLIQAWCSTNSANGVDRIPTPKSPLDKAHVEKLVKDLDSPRCFQFTLEKLHALATESERNRRCMAESGVAKAMIRLITKIFKQGNTTFLEESLRILRLLWSDNVNMKRLIDESFDFFNSLTWILQLHHNDVKVINEAMPIMKLAIEVKDSTFLGNLKVEFFRGIIMSVLKNRAISQQAIKSALHVLIETCPLGRNRMKIVEASAVTELIELALEKLEKSVTELIFILLAHLCSCADGREQFLKHAGGIAVLSKRTLRVSPTTDDRALHVFSLISKYSASNEVVQEMLRVGAVSKLCMVMQADCASYLKEKARGILRLHSRAWNNSPCIQVYLLTRHQR 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi322g00003 389 SUPERFAMILY RING/U-box 1 67 - -
Sebi322g00003 389 SUPERFAMILY ARM repeat 77 362 IPR016024 -
Sebi322g00003 389 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 64 IPR013083 -
Sebi322g00003 389 PANTHER WDSAM1 PROTEIN 1 380 IPR045185 GO:0061630
Sebi322g00003 389 Gene3D - 81 376 IPR011989 -
Sebi322g00003 389 Pfam U-box domain 1 62 IPR003613 GO:0004842|GO:0016567
Sebi322g00003 389 SMART Ubox_2 1 57 IPR003613 GO:0004842|GO:0016567
Sebi322g00003 389 ProSiteProfiles U-box domain profile. 1 64 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi322g00003 Sebi-Chr322 56207 57376 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi322g00003 1 379 U-box Gene Family AT2G35930 40.260 8.27e-93 283