Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi321g00043 CATGGTATTTGCGATTGTGGCCTGTGTATACCCATTGGTTTGTTCTTGTATGCTCAGTATAATGCTGACTATGAAGCGTCTTTGTCACTGCTATGCTTATTTTTCATCAGCATGGATCTCGTGATTATGACAGAGAATCTTCCAGAAGCCGGGACAAGGAACGAGAGAAAGGGAGAGAAAGGGAGAGAAAAAGGGAGAAGGGGAGGGACAGGGATAGGGACTCGGAGAGAAGCAGGGACAGGGATTCAGAGAGAAGCAGGGACAGGGACAGAGATAGGGAGAGAAGCAAAGACAGGGAACGAGATCGGGATGGGGAGAAAGAAAGGGACCGTGACCACCATCATAGAGATCGACATAGGGATCGTAGTGAGAGAAGTGAAAGGGGAAGGGATAGAGGAGATGATGATGATTATTACAGAAGCCGGGACTATGACAGGCAATCTATTGTCTTATATAAGAAGTCACAATTTTATGTTCAAAACATTGGCCATCAAAAGGACTAGTGGTTTTGATATGGCTCCCCCTGCTACTGCAATGTTGGCTGGTGCTTCTGCTGTTGCAGGTCAGATCCCTGGGGCAAATCCTGCGATTCCTGGAATGTTTCCAAATATGTTTCCATTGGCTACAAGCCAGCCTTTTAGTGCTCTCCCTGTCATGCCAGTTCAGGCTATGACACAACAGGCTACACGACATGCTAGGCGGGTGTATGTTGGTGGTCTCCCTCCTACAGCCAATGAGCAGTCGGTTGCAACTTTCTTTAGTCAGGTTATGGCTAAGATTGGAGGAAATACTGCTGGTCCAGGTGATGCAGTGGTTAATGTTTACATTAACCATGACAAGAAGTTTGCCTTTGTGGAGATGAGGTCTGTTGAGGAAGCTAGCAATGCAATGGCTTTGGATGGGATCATTTTTGAGGGTGCACCTGTTAAGGTCAGGAGACCTACTGATTATAATCCTTCTCTAGCTGCTACCCTAGGCCCAAGCCAACCTAACCCAAACCTTAATCTGGGTGCTGTTGGCTTAACACCTGGATCTGCTGGTGGTCTCGATGGCCCTGATCGGATTTTTGTGGGAGGACTTCCTTATTACTTCACCGAAACACAGATCAGAGAGCTTTTAGAGACTTTTGGTCCTCTTCGAGGTTTTGATCTAGTGAAAGATAGAGAAACAGGGAATTCAAAGGGTTATGCATTCTGTGTTTACCAAGATCTTGCAGTTACAGATATTGCCTGTGCAGCTCTTAATGGAATAAAAATGGGAGATAAGACTCTTACGGTTAGACGAGCTAATCAAGGTGCAAACCCGCAGCAGCCTAAGCCTGAGCAAGAGAGCATTTTAATGCATGCACAGCAGCAGATTGCTCTGCAGAAACTTATGCTACAACCAGCATTAGTGGCAACGAAGGTGGTATGTTTAACTCACGCAGTTTCTGCTGATGAGCTCAAAGATGATGAGGACTATGAAGAGATTCTTGATGATATGAGACAGGAATGCTCCAAATTTGGTTCTTTGGTGAATGTGGTGATCCCTCGCCCACAACCCAATGATGAACTGACCCCTGGAGTTGGGAAGGTATTTTTGGAGTATGTTGATGTTGATGGTGCTACAAAAGCCCGTGCTGGATTGAATGGACGAAAATTTGGCGGAAATCAAGTGATAGCTGTCTTTTATCCAGAGAACAAATTTGCTCAGGGAGATTATGAAGGCTAA 1710 0.4567 HGICDCGLCIPIGLFLYAQYNADYEASLSLLCLFFISMDLVIMTENLPEAGTRNERKGEKGREKGRRGGTGIGTRREAGTGIQREAGTGTEIGREAKTGNEIGMGRKKGTVTTIIEIDIGIVVREVKGEGIEEMMMIITEAGTMTGNLLSYIRSHNFMFKTLAIKRTSGFDMAPPATAMLAGASAVAGQIPGANPAIPGMFPNMFPLATSQPFSALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAKIGGNTAGPGDAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIIFEGAPVKVRRPTDYNPSLAATLGPSQPNPNLNLGAVGLTPGSAGGLDGPDRIFVGGLPYYFTETQIRELLETFGPLRGFDLVKDRETGNSKGYAFCVYQDLAVTDIACAALNGIKMGDKTLTVRRANQGANPQQPKPEQESILMHAQQQIALQKLMLQPALVATKVVCLTHAVSADELKDDEDYEEILDDMRQECSKFGSLVNVVIPRPQPNDELTPGVGKVFLEYVDVDGATKARAGLNGRKFGGNQVIAVFYPENKFAQGDYEG 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi321g00043 569 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 233 316 IPR000504 GO:0003723
Sebi321g00043 569 CDD RRM2_U2AF65 353 429 - -
Sebi321g00043 569 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 355 424 IPR000504 GO:0003723
Sebi321g00043 569 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 492 552 IPR000504 GO:0003723
Sebi321g00043 569 Gene3D - 463 568 IPR012677 -
Sebi321g00043 569 FunFam U2 snRNP auxiliary factor large subunit 463 568 - -
Sebi321g00043 569 SUPERFAMILY RNA-binding domain, RBD 354 559 IPR035979 GO:0003676
Sebi321g00043 569 MobiDBLite consensus disorder prediction 51 71 - -
Sebi321g00043 569 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 353 431 IPR000504 GO:0003723
Sebi321g00043 569 Gene3D - 344 445 IPR012677 -
Sebi321g00043 569 SMART rrm1_1 234 312 IPR000504 GO:0003723
Sebi321g00043 569 SMART rrm1_1 475 556 IPR000504 GO:0003723
Sebi321g00043 569 SMART rrm1_1 354 427 IPR000504 GO:0003723
Sebi321g00043 569 FunFam U2 snRNP auxiliary factor large subunit 228 329 - -
Sebi321g00043 569 SUPERFAMILY RNA-binding domain, RBD 218 319 IPR035979 GO:0003676
Sebi321g00043 569 CDD RRM1_U2AF65 232 314 - -
Sebi321g00043 569 Gene3D - 228 329 IPR012677 -
Sebi321g00043 569 NCBIfam U2 snRNP auxilliary factor, large subunit, splicing factor 165 567 IPR006529 GO:0003723|GO:0005634|GO:0006397
Sebi321g00043 569 CDD RRM3_U2AF65 467 555 - -
Sebi321g00043 569 MobiDBLite consensus disorder prediction 51 104 - -
Sebi321g00043 569 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 474 560 IPR000504 GO:0003723
Sebi321g00043 569 FunFam U2 snRNP auxiliary factor large subunit 330 445 - -
Sebi321g00043 569 PANTHER RNA-BINDING PROTEIN 60 567 - -
Sebi321g00043 569 SMART rrm2_1 469 555 IPR003954 GO:0003676
Sebi321g00043 569 SMART rrm2_1 234 312 IPR003954 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi321g00043 Sebi-Chr321 992134 998889 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi321g00043 355 548 Eukaryotic Initiation Factors Gene Family AT1G22760 25.510 2.80e-06 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi321g00043 K12837 - gmx:100793801 775.778