Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi320g00029 ATGCTTGATAATGTGGACCAATTTCGTGATTTCATCAACTCAACTCGGAGATTGTGTTCTCTTCTAGGTGGTTGGGTTTCTGGTTTAATATCAAAACCTTACAGAAAAGTTGGCTCAACATTTGATGGTTCTCTTTCTAGATTGGCTGAGGAAAGAGAAAATTATTATTTAGATTTCATGGATGAGTGTATATATATTAGTTCATCGGATGATGACTTGGAGGAGATAGAAGATCCGAGGAGGAGTCTCCCACAGTGGGCTACTACTGAAAGGAATTCAGATCACGGTGGGTGGTCTAGGAAGGATAGTTCTTCAAGAGGGGCAAATGGTTCAAACACAAGCTCTTCTAACATATATAATCATTCACAACTCAGGCCCCATACTCAACCTGTGCCCAACAAGAACACACCAAACCACAAAGTTGCACGAAGAGATGAACCTTCCTATCATACCCAGAATGGAAACACAAGTCAGCATCAGACAGTTAATTCTCGAATTTCTAATAGTTATGGTGCCAATTATGAGAAAATGACATCTCAACAAGCTTTCAAGAGGACCCTTCCATCATCTGTTCAACCATCGGCAACGAGGGCTCTTCCATCTTCGTCATTTGCACTGGATAGCAGATTAAGCAACTTAAAAGATAACATAGGCAGCAGTCAACTTCATGATGCTTATTGGAATCGTCGCCTTGGAGTAGGACCTAGCACATCCAGTGACAAAGGCAATGTTCGTGACCATTTTAGCAGAGGCAACGATGAAGATCGTTTCATGTATCAAAATGGTGGGAGTAGGATTATTCCTTCATCTGTGATGCTTGGAAAGGCTATAACTCCACCGTTTGCTAGTTCAAGTGAATCTGCATACCGTTCTGGAGCAGGTGATGAAAGGGCTTCTGGAAATGACGAGAGGCTAATTTATGAGGCAGCATTAGAGGATATCAGTCAACCAAAAGCAGAAGCTGATTTACCTGATGGTCTTATGTCTGTCTCTCTTCTGAGACACCAGAAAATTGCATTGGCTTGGATGCTTCAGAAGGAAACCAAGAGTTTGCATTGTTTGGGGGGTATTTTGGCTGATGATCAGGGCCTTGGAAAGACAATTTCAATGATCGCACTCATCCTAATGCAGAGGCCATTACAGTCAAAATCGAAAGTGGATGATACATGCAATCATAAAACTGAAGCCTTGAATTTGGATGATGATGATGACATTGGTAGTGTTGATGTAGAGAAGCTTAAAAGGAATGAAGATTCTGATGATATAAAACCTGTTACAGAACCAAGTAGTTCCACTTGGGCACCACAAAGGAAAAGGCCTGCTGCTGGTACACTGGTTGTCTGTCCTGCAAGTGTTCTTCGGCAGTGGGCCAGGGAGCTTGATGATAAAGTTGGGGATGAAAAACTCTCTGTTTTGATTTATCATGGAGGCAGTAGGACAAAGGATCCTGTTGAACTTGCAAAGTTTGATGTGGTTCTCACAACATACTCTCTCGTGACTAACGAAGTTCCAAAGCAACCATTAGTTGAGGAGGATGATATGGATGAAAAAGATGGGGAAAGATTTGGATTATCCTCTGAGTTATTTGTCAGTAAAAAAAGGAAAAAGCCATTTAATGGAAGTAAGAAGAGTAAAAAAGGTAGAAAGGGAATTGACAGTTCTTCTATTGATTGTGCTTCTGGTGCTCTTGCAAAAGTAGGTTGGTTTAGGGTTATTCTAGATGAAGCTCAAACAATAAAGAATCATAGAACTCAGGTGGCTAGAGCTTGTTGCAGCCTTAGGGCCAAAAGGAGGTGGTGCTTATCTGGAACGCCTATTCAAAATACTATTGATGATTTGTATAGCTACTTTAGGTTCCTGAAGTATGATCCTTATGCTGTATATAAATCATTTTACAATACAATAAAAGTTCCAATATCCAGAAATTCCATTCAAGGTTACAAGAAACTTCAAGCAGTTTTGAGGGCCATAATGCTACGTCGTACAAAAGGTTTGGAAGTGTGTCCTTCAAAACTATCATGGGGGATGGACAAACTGGGAACTTTGATTGATGGGAAGCCAATAATCACTTTACCTCCTAAAACTATAAAGCTGAGCAAGGTAGATTTCTCCATTGAGGAACGGGCCTTCTACCACAAGTTGGAAGCCGATTCACGTTCTCAATTTAAGGCATATGCTGCTGCTGGCACAGTCAATCAAAACTATGCAAATATTCTTTTAATGCTTTTACGTCTCCGTCAGGCTTGTGACCATCCGCTTCTTGTTAAAGATTATGATTCAGATCATGTTGGGAAAGATTCTATTGAAATGGCAAAAAAGCTTCCAAGGGATTTGCTGATTAATCTATTTAATTGCTTGGAAGCAACCTTTGCTATATGTCATGTTTGCAATGACCCACCTGAAGACCCTGTTGTTACAATGTGTGGCCATGTCTTCTGTTATCAATGTGTATCAGAATATTTGACAGGTGATGATAATATGTGCCCTGCAGTTGATTGTAAAGAACAAATTGGTGACGATCTTGTCTTTACCAAAGCAACTTTGAGGAGTTGCCTCTCTGATGATCTTAATGGTAGTAGTTCTGCAAATTCGCATCCTATCGATTATTCACTAGTGCAGCATAGTGAGTACAGTTCATCTAAAATCAAAGCTGTCCTTGAGGTCCTGCAGTCAAATTGTAAATTGAAGACTCCTAGTTCTGGTTTACCGAATTGCTCTGGTGGCAATAGAGATTCACTGTCTCCTGATAATTCATATATTGAAGATTGCGACTCAGATGTTAGGATTACAAAACACACAAGAAAATATTCAGAGTCCACAGCTGAAGGACCAATAAAGGCTATAGTTTTTTCTCAGTGGACTAGCATGTTGGACTTAGTTGAGACATCATTGGAACAATATGGTATACAATACAGGAGACTTGATGGTAGGATGACTCTGGTTGCGAGGGACAAAGCTGTTAAGGATTTCAACACTGATCCAGAGATTACCGTTATGCTGATGTCACTAAAAGCAGGAAATCTTGGTTTGAATATGGTTGCTGCATGTCATGTTATTCTTTTGGATCTATGGTGGAATCCAACAACTGAAGATCAAGCTATTGATCGAGCTCATAGAATTGGACAGACTCGCCCTGTTACTGTGACACGGATCACTATAAAAGATACAGTTGAAGATAGAATACTGGCTCTTCAGGAAGAAAAGAGAAAAATGGTTGCATCTGCGTTTGGTGAAGACCATGCCGGCAGTTCCGGAACTCGTCTTACAGTTGAAGATCTGAAATATCTTTTCATGGTCTAG 3300 0.4036 MLDNVDQFRDFINSTRRLCSLLGGWVSGLISKPYRKVGSTFDGSLSRLAEERENYYLDFMDECIYISSSDDDLEEIEDPRRSLPQWATTERNSDHGGWSRKDSSSRGANGSNTSSSNIYNHSQLRPHTQPVPNKNTPNHKVARRDEPSYHTQNGNTSQHQTVNSRISNSYGANYEKMTSQQAFKRTLPSSVQPSATRALPSSSFALDSRLSNLKDNIGSSQLHDAYWNRRLGVGPSTSSDKGNVRDHFSRGNDEDRFMYQNGGSRIIPSSVMLGKAITPPFASSSESAYRSGAGDERASGNDERLIYEAALEDISQPKAEADLPDGLMSVSLLRHQKIALAWMLQKETKSLHCLGGILADDQGLGKTISMIALILMQRPLQSKSKVDDTCNHKTEALNLDDDDDIGSVDVEKLKRNEDSDDIKPVTEPSSSTWAPQRKRPAAGTLVVCPASVLRQWARELDDKVGDEKLSVLIYHGGSRTKDPVELAKFDVVLTTYSLVTNEVPKQPLVEEDDMDEKDGERFGLSSELFVSKKRKKPFNGSKKSKKGRKGIDSSSIDCASGALAKVGWFRVILDEAQTIKNHRTQVARACCSLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFYNTIKVPISRNSIQGYKKLQAVLRAIMLRRTKGLEVCPSKLSWGMDKLGTLIDGKPIITLPPKTIKLSKVDFSIEERAFYHKLEADSRSQFKAYAAAGTVNQNYANILLMLLRLRQACDHPLLVKDYDSDHVGKDSIEMAKKLPRDLLINLFNCLEATFAICHVCNDPPEDPVVTMCGHVFCYQCVSEYLTGDDNMCPAVDCKEQIGDDLVFTKATLRSCLSDDLNGSSSANSHPIDYSLVQHSEYSSSKIKAVLEVLQSNCKLKTPSSGLPNCSGGNRDSLSPDNSYIEDCDSDVRITKHTRKYSESTAEGPIKAIVFSQWTSMLDLVETSLEQYGIQYRRLDGRMTLVARDKAVKDFNTDPEITVMLMSLKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRILALQEEKRKMVASAFGEDHAGSSGTRLTVEDLKYLFMV 1099
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi320g00029 1099 MobiDBLite consensus disorder prediction 102 136 - -
Sebi320g00029 1099 SUPERFAMILY RING/U-box 791 840 - -
Sebi320g00029 1099 MobiDBLite consensus disorder prediction 234 255 - -
Sebi320g00029 1099 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 108 1098 - -
Sebi320g00029 1099 CDD DEXDc_SHPRH-like 332 661 - -
Sebi320g00029 1099 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 425 512 - -
Sebi320g00029 1099 Pfam Helicase conserved C-terminal domain 945 1041 IPR001650 -
Sebi320g00029 1099 SMART helicmild6 958 1041 IPR001650 -
Sebi320g00029 1099 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 786 843 IPR013083 -
Sebi320g00029 1099 ProSiteProfiles Zinc finger RING-type profile. 793 829 IPR001841 -
Sebi320g00029 1099 Pfam Zinc finger, C3HC4 type (RING finger) 793 829 - -
Sebi320g00029 1099 SMART ultradead3 328 640 IPR014001 -
Sebi320g00029 1099 SMART ring_2 793 831 IPR001841 -
Sebi320g00029 1099 MobiDBLite consensus disorder prediction 74 163 - -
Sebi320g00029 1099 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 541 670 - -
Sebi320g00029 1099 ProSitePatterns Zinc finger RING-type signature. 808 817 IPR017907 -
Sebi320g00029 1099 Pfam SNF2-related domain 335 754 IPR000330 GO:0005524|GO:0140658
Sebi320g00029 1099 MobiDBLite consensus disorder prediction 416 438 - -
Sebi320g00029 1099 MobiDBLite consensus disorder prediction 148 163 - -
Sebi320g00029 1099 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 321 661 IPR027417 -
Sebi320g00029 1099 Gene3D - 307 390 IPR038718 -
Sebi320g00029 1099 Gene3D - 524 670 IPR038718 -
Sebi320g00029 1099 MobiDBLite consensus disorder prediction 535 554 - -
Sebi320g00029 1099 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 687 1098 IPR027417 -
Sebi320g00029 1099 Gene3D - 428 514 IPR038718 -
Sebi320g00029 1099 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 928 1094 IPR001650 -
Sebi320g00029 1099 Gene3D - 692 1098 IPR027417 -
Sebi320g00029 1099 CDD SF2_C_SNF 942 1050 - -
Sebi320g00029 1099 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 347 623 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi320g00029 Sebi-Chr320 321372 330502 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi320g00029 60 999 RAD5 or RAD16-like Gene Family AT1G50410 54.658 0.0 905
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Sebi320g00029 SNF2_N 6.2e-63 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi320g00029 - - gmx:100795142 1709.5